Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08670

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08665 and BWI76_RS08670 are separated by 60 nucleotidesBWI76_RS08670 and BWI76_RS08675 are separated by 134 nucleotides BWI76_RS08665: BWI76_RS08665 - 6-phosphogluconolactonase, at 1,826,887 to 1,827,882 _RS08665 BWI76_RS08670: BWI76_RS08670 - N-acetyltransferase, at 1,827,943 to 1,828,419 _RS08670 BWI76_RS08675: BWI76_RS08675 - GntR family transcriptional regulator, at 1,828,554 to 1,830,023 _RS08675 Position (kb) 1827 1828 1829Strain fitness (log2 ratio) -2 -1 0 1at 1827.049 kb on + strand, within BWI76_RS08665at 1827.097 kb on + strand, within BWI76_RS08665at 1827.097 kb on + strand, within BWI76_RS08665at 1827.200 kb on + strand, within BWI76_RS08665at 1827.543 kb on - strand, within BWI76_RS08665at 1827.612 kb on + strand, within BWI76_RS08665at 1827.730 kb on - strand, within BWI76_RS08665at 1827.779 kb on + strand, within BWI76_RS08665at 1828.018 kb on - strand, within BWI76_RS08670at 1828.042 kb on - strand, within BWI76_RS08670at 1828.240 kb on - strand, within BWI76_RS08670at 1828.240 kb on - strand, within BWI76_RS08670at 1828.298 kb on - strand, within BWI76_RS08670at 1828.450 kb on + strandat 1828.450 kb on + strandat 1828.614 kb on + strandat 1828.632 kb on - strandat 1828.642 kb on - strandat 1828.705 kb on - strand, within BWI76_RS08675at 1828.755 kb on + strand, within BWI76_RS08675at 1828.885 kb on + strand, within BWI76_RS08675at 1829.017 kb on - strand, within BWI76_RS08675at 1829.069 kb on - strand, within BWI76_RS08675at 1829.127 kb on - strand, within BWI76_RS08675at 1829.182 kb on - strand, within BWI76_RS08675at 1829.276 kb on + strand, within BWI76_RS08675at 1829.351 kb on + strand, within BWI76_RS08675at 1829.359 kb on - strand, within BWI76_RS08675at 1829.359 kb on - strand, within BWI76_RS08675at 1829.392 kb on + strand, within BWI76_RS08675at 1829.400 kb on - strand, within BWI76_RS08675at 1829.418 kb on - strand, within BWI76_RS08675

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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1,827,049 + BWI76_RS08665 0.16 -0.9
1,827,097 + BWI76_RS08665 0.21 -1.0
1,827,097 + BWI76_RS08665 0.21 +0.4
1,827,200 + BWI76_RS08665 0.31 -0.4
1,827,543 - BWI76_RS08665 0.66 -0.8
1,827,612 + BWI76_RS08665 0.73 +0.0
1,827,730 - BWI76_RS08665 0.85 -0.8
1,827,779 + BWI76_RS08665 0.90 -1.0
1,828,018 - BWI76_RS08670 0.16 +0.6
1,828,042 - BWI76_RS08670 0.21 +0.7
1,828,240 - BWI76_RS08670 0.62 +1.0
1,828,240 - BWI76_RS08670 0.62 +0.4
1,828,298 - BWI76_RS08670 0.74 +0.3
1,828,450 + -2.2
1,828,450 + -1.1
1,828,614 + -0.6
1,828,632 - -0.2
1,828,642 - -0.5
1,828,705 - BWI76_RS08675 0.10 +0.5
1,828,755 + BWI76_RS08675 0.14 +0.3
1,828,885 + BWI76_RS08675 0.23 +0.3
1,829,017 - BWI76_RS08675 0.31 +0.0
1,829,069 - BWI76_RS08675 0.35 -0.5
1,829,127 - BWI76_RS08675 0.39 +0.3
1,829,182 - BWI76_RS08675 0.43 -0.7
1,829,276 + BWI76_RS08675 0.49 +0.6
1,829,351 + BWI76_RS08675 0.54 +0.0
1,829,359 - BWI76_RS08675 0.55 -0.4
1,829,359 - BWI76_RS08675 0.55 -0.4
1,829,392 + BWI76_RS08675 0.57 +0.8
1,829,400 - BWI76_RS08675 0.58 +0.4
1,829,418 - BWI76_RS08675 0.59 +0.8

Or see this region's nucleotide sequence