Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07350 and BWI76_RS07355 are separated by 365 nucleotides BWI76_RS07355 and BWI76_RS07360 are separated by 141 nucleotides
BWI76_RS07350: BWI76_RS07350 - alcohol dehydrogenase, at 1,548,661 to 1,549,614
_RS07350
BWI76_RS07355: BWI76_RS07355 - TonB-dependent siderophore receptor, at 1,549,980 to 1,552,169
_RS07355
BWI76_RS07360: BWI76_RS07360 - phenylalanine transporter, at 1,552,311 to 1,553,687
_RS07360
Position (kb)
1549
1550
1551
1552
1553 Strain fitness (log2 ratio)
-2
-1
0
1 at 1549.476 kb on - strand, within BWI76_RS07350 at 1549.591 kb on + strand at 1549.599 kb on - strand at 1549.777 kb on - strand at 1550.028 kb on + strand at 1550.109 kb on + strand at 1550.152 kb on - strand at 1550.391 kb on + strand, within BWI76_RS07355 at 1550.491 kb on - strand, within BWI76_RS07355 at 1550.865 kb on - strand, within BWI76_RS07355 at 1551.001 kb on - strand, within BWI76_RS07355 at 1551.276 kb on + strand, within BWI76_RS07355 at 1551.319 kb on + strand, within BWI76_RS07355 at 1551.672 kb on + strand, within BWI76_RS07355 at 1551.820 kb on + strand, within BWI76_RS07355 at 1551.869 kb on + strand, within BWI76_RS07355 at 1551.879 kb on + strand, within BWI76_RS07355 at 1551.887 kb on - strand, within BWI76_RS07355 at 1552.103 kb on + strand at 1552.268 kb on + strand at 1552.270 kb on - strand at 1552.294 kb on + strand at 1552.311 kb on - strand at 1552.335 kb on - strand at 1552.483 kb on + strand, within BWI76_RS07360 at 1552.538 kb on + strand, within BWI76_RS07360 at 1552.795 kb on + strand, within BWI76_RS07360 at 1552.805 kb on + strand, within BWI76_RS07360 at 1552.805 kb on + strand, within BWI76_RS07360 at 1553.106 kb on + strand, within BWI76_RS07360
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,549,476 - BWI76_RS07350 0.85 -0.1 1,549,591 + -1.0 1,549,599 - -1.1 1,549,777 - -0.1 1,550,028 + +0.2 1,550,109 + +1.0 1,550,152 - -0.8 1,550,391 + BWI76_RS07355 0.19 +1.4 1,550,491 - BWI76_RS07355 0.23 +1.0 1,550,865 - BWI76_RS07355 0.40 +1.7 1,551,001 - BWI76_RS07355 0.47 +0.1 1,551,276 + BWI76_RS07355 0.59 -0.1 1,551,319 + BWI76_RS07355 0.61 +0.8 1,551,672 + BWI76_RS07355 0.77 +0.4 1,551,820 + BWI76_RS07355 0.84 +0.3 1,551,869 + BWI76_RS07355 0.86 -0.1 1,551,879 + BWI76_RS07355 0.87 -1.2 1,551,887 - BWI76_RS07355 0.87 +0.7 1,552,103 + -1.8 1,552,268 + +1.5 1,552,270 - +1.5 1,552,294 + +0.2 1,552,311 - +0.2 1,552,335 - +0.3 1,552,483 + BWI76_RS07360 0.12 +0.5 1,552,538 + BWI76_RS07360 0.16 -0.8 1,552,795 + BWI76_RS07360 0.35 -0.0 1,552,805 + BWI76_RS07360 0.36 -1.1 1,552,805 + BWI76_RS07360 0.36 -0.6 1,553,106 + BWI76_RS07360 0.58 -0.5
Or see this region's nucleotide sequence