Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01700 and BWI76_RS01705 are separated by 236 nucleotides BWI76_RS01705 and BWI76_RS01710 overlap by 1 nucleotides BWI76_RS01710 and BWI76_RS01715 are separated by 31 nucleotides BWI76_RS01715 and BWI76_RS01720 overlap by 8 nucleotides
BWI76_RS01700: BWI76_RS01700 - dipeptidase E, at 350,137 to 350,826
_RS01700
BWI76_RS01705: BWI76_RS01705 - CcdB antidote CcdA, at 351,063 to 351,356
_RS01705
BWI76_RS01710: BWI76_RS01710 - DNA gyrase inhibitor, at 351,356 to 351,673
_RS01710
BWI76_RS01715: BWI76_RS01715 - shikimate 5-dehydrogenase, at 351,705 to 352,514
_RS01715
BWI76_RS01720: BWI76_RS01720 - L-sorbose 1-phosphate reductase (EC 1.1.1.-) <small>(from data)</small>, at 352,507 to 353,736
_RS01720
Position (kb) 351
352 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 350.457 kb on - strand, within BWI76_RS01700 at 350.457 kb on - strand, within BWI76_RS01700 at 350.722 kb on - strand, within BWI76_RS01700 at 350.780 kb on - strand at 350.908 kb on - strand at 350.909 kb on + strand at 350.922 kb on - strand at 350.922 kb on - strand at 350.963 kb on - strand at 351.034 kb on - strand at 351.258 kb on + strand, within BWI76_RS01705 at 351.310 kb on + strand, within BWI76_RS01705 at 351.443 kb on + strand, within BWI76_RS01710 at 351.458 kb on - strand, within BWI76_RS01710 at 351.622 kb on + strand, within BWI76_RS01710 at 351.622 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.635 kb on - strand, within BWI76_RS01710 at 351.682 kb on + strand at 351.682 kb on + strand at 351.690 kb on - strand at 351.722 kb on - strand at 351.777 kb on + strand at 351.834 kb on + strand, within BWI76_RS01715 at 351.988 kb on - strand, within BWI76_RS01715 at 351.999 kb on - strand, within BWI76_RS01715 at 352.145 kb on - strand, within BWI76_RS01715 at 352.218 kb on - strand, within BWI76_RS01715 at 352.249 kb on + strand, within BWI76_RS01715 at 352.280 kb on + strand, within BWI76_RS01715 at 352.309 kb on - strand, within BWI76_RS01715 at 352.346 kb on - strand, within BWI76_RS01715 at 352.391 kb on - strand, within BWI76_RS01715 at 352.392 kb on + strand, within BWI76_RS01715 at 352.416 kb on - strand, within BWI76_RS01715 at 352.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 350,457 - BWI76_RS01700 0.46 -4.0 350,457 - BWI76_RS01700 0.46 +0.4 350,722 - BWI76_RS01700 0.85 -0.1 350,780 - +0.7 350,908 - +0.2 350,909 + +0.5 350,922 - +0.7 350,922 - -0.4 350,963 - -0.1 351,034 - +1.0 351,258 + BWI76_RS01705 0.66 -1.1 351,310 + BWI76_RS01705 0.84 -0.1 351,443 + BWI76_RS01710 0.27 -0.1 351,458 - BWI76_RS01710 0.32 +0.9 351,622 + BWI76_RS01710 0.84 +0.0 351,622 + BWI76_RS01710 0.84 -0.1 351,627 + BWI76_RS01710 0.85 +0.5 351,627 + BWI76_RS01710 0.85 -0.3 351,627 + BWI76_RS01710 0.85 -0.1 351,630 - BWI76_RS01710 0.86 +0.2 351,630 - BWI76_RS01710 0.86 -0.7 351,630 - BWI76_RS01710 0.86 -1.2 351,635 - BWI76_RS01710 0.88 -0.8 351,682 + -1.1 351,682 + -0.0 351,690 - +0.6 351,722 - +0.6 351,777 + +0.4 351,834 + BWI76_RS01715 0.16 +0.9 351,988 - BWI76_RS01715 0.35 +1.0 351,999 - BWI76_RS01715 0.36 -0.6 352,145 - BWI76_RS01715 0.54 -0.3 352,218 - BWI76_RS01715 0.63 +0.4 352,249 + BWI76_RS01715 0.67 -0.1 352,280 + BWI76_RS01715 0.71 -1.4 352,309 - BWI76_RS01715 0.75 +0.8 352,346 - BWI76_RS01715 0.79 +0.3 352,391 - BWI76_RS01715 0.85 +0.7 352,392 + BWI76_RS01715 0.85 -0.3 352,416 - BWI76_RS01715 0.88 -0.6 352,486 + +0.7
Or see this region's nucleotide sequence