Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03975 and PFLU_RS03980 are separated by 61 nucleotides PFLU_RS03980 and PFLU_RS03985 overlap by 4 nucleotides
PFLU_RS03975: PFLU_RS03975 - DUF1631 domain-containing protein, at 896,634 to 898,784
_RS03975
PFLU_RS03980: PFLU_RS03980 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 898,846 to 899,409
_RS03980
PFLU_RS03985: PFLU_RS03985 - membrane protein, at 899,406 to 900,242
_RS03985
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 897.894 kb on + strand, within PFLU_RS03975 at 897.894 kb on + strand, within PFLU_RS03975 at 897.894 kb on + strand, within PFLU_RS03975 at 897.894 kb on + strand, within PFLU_RS03975 at 897.895 kb on - strand, within PFLU_RS03975 at 897.895 kb on - strand, within PFLU_RS03975 at 897.989 kb on + strand, within PFLU_RS03975 at 898.100 kb on + strand, within PFLU_RS03975 at 898.111 kb on + strand, within PFLU_RS03975 at 898.111 kb on + strand, within PFLU_RS03975 at 898.111 kb on + strand, within PFLU_RS03975 at 898.291 kb on + strand, within PFLU_RS03975 at 898.291 kb on + strand, within PFLU_RS03975 at 898.292 kb on - strand, within PFLU_RS03975 at 898.292 kb on - strand, within PFLU_RS03975 at 898.453 kb on + strand, within PFLU_RS03975 at 898.453 kb on + strand, within PFLU_RS03975 at 898.454 kb on - strand, within PFLU_RS03975 at 898.454 kb on - strand, within PFLU_RS03975 at 898.454 kb on - strand, within PFLU_RS03975 at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.613 kb on + strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.614 kb on - strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.617 kb on + strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.618 kb on - strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.619 kb on + strand at 898.620 kb on - strand at 898.620 kb on - strand at 898.620 kb on - strand at 898.620 kb on - strand at 898.625 kb on + strand at 898.704 kb on - strand at 898.704 kb on - strand at 898.704 kb on - strand at 898.704 kb on - strand at 898.747 kb on + strand at 898.811 kb on + strand at 898.811 kb on + strand at 898.812 kb on - strand at 898.812 kb on - strand at 898.812 kb on - strand at 898.846 kb on - strand at 898.846 kb on - strand at 898.846 kb on - strand at 898.846 kb on - strand at 898.950 kb on + strand, within PFLU_RS03980 at 898.950 kb on + strand, within PFLU_RS03980 at 898.950 kb on + strand, within PFLU_RS03980 at 898.950 kb on + strand, within PFLU_RS03980 at 898.950 kb on + strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 898.951 kb on - strand, within PFLU_RS03980 at 899.035 kb on + strand, within PFLU_RS03980 at 899.035 kb on + strand, within PFLU_RS03980 at 899.036 kb on - strand, within PFLU_RS03980 at 899.036 kb on - strand, within PFLU_RS03980 at 899.036 kb on - strand, within PFLU_RS03980 at 899.094 kb on + strand, within PFLU_RS03980 at 899.111 kb on + strand, within PFLU_RS03980 at 899.112 kb on - strand, within PFLU_RS03980 at 899.112 kb on - strand, within PFLU_RS03980 at 899.112 kb on - strand, within PFLU_RS03980 at 899.206 kb on - strand, within PFLU_RS03980 at 899.236 kb on + strand, within PFLU_RS03980 at 899.236 kb on + strand, within PFLU_RS03980 at 899.236 kb on + strand, within PFLU_RS03980 at 899.237 kb on - strand, within PFLU_RS03980 at 899.237 kb on - strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.289 kb on + strand, within PFLU_RS03980 at 899.290 kb on - strand, within PFLU_RS03980 at 899.290 kb on - strand, within PFLU_RS03980 at 899.434 kb on + strand at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.661 kb on + strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.662 kb on - strand, within PFLU_RS03985 at 899.832 kb on + strand, within PFLU_RS03985 at 899.833 kb on - strand, within PFLU_RS03985 at 899.862 kb on + strand, within PFLU_RS03985 at 899.863 kb on - strand, within PFLU_RS03985 at 899.863 kb on - strand, within PFLU_RS03985 at 900.139 kb on + strand, within PFLU_RS03985 at 900.139 kb on + strand, within PFLU_RS03985 at 900.139 kb on + strand, within PFLU_RS03985 at 900.207 kb on + strand at 900.207 kb on + strand at 900.207 kb on + strand at 900.207 kb on + strand at 900.208 kb on - strand at 900.283 kb on - strand at 900.283 kb on - strand at 900.283 kb on - strand at 900.380 kb on + strand at 900.380 kb on + strand at 900.380 kb on + strand at 900.381 kb on - strand at 900.381 kb on - strand at 900.381 kb on - strand at 900.385 kb on + strand at 900.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride remove 897,894 + PFLU_RS03975 0.59 -1.1 897,894 + PFLU_RS03975 0.59 -0.9 897,894 + PFLU_RS03975 0.59 +1.1 897,894 + PFLU_RS03975 0.59 -0.6 897,895 - PFLU_RS03975 0.59 -0.5 897,895 - PFLU_RS03975 0.59 -1.8 897,989 + PFLU_RS03975 0.63 -1.7 898,100 + PFLU_RS03975 0.68 -0.1 898,111 + PFLU_RS03975 0.69 +2.0 898,111 + PFLU_RS03975 0.69 +0.0 898,111 + PFLU_RS03975 0.69 -1.2 898,291 + PFLU_RS03975 0.77 -0.3 898,291 + PFLU_RS03975 0.77 +2.0 898,292 - PFLU_RS03975 0.77 +0.4 898,292 - PFLU_RS03975 0.77 -1.1 898,453 + PFLU_RS03975 0.85 +0.3 898,453 + PFLU_RS03975 0.85 -1.8 898,454 - PFLU_RS03975 0.85 +1.1 898,454 - PFLU_RS03975 0.85 -1.1 898,454 - PFLU_RS03975 0.85 -0.6 898,613 + +0.8 898,613 + +1.0 898,613 + -1.0 898,613 + +0.2 898,613 + -1.3 898,613 + -0.8 898,613 + +3.7 898,613 + -2.4 898,613 + +0.7 898,614 - -0.5 898,614 - -0.0 898,614 - -2.5 898,614 - +1.3 898,614 - +2.0 898,614 - -1.4 898,614 - -0.1 898,614 - -2.2 898,614 - -0.6 898,614 - -1.0 898,614 - +1.5 898,614 - +1.6 898,614 - -1.3 898,614 - +0.9 898,614 - -1.9 898,617 + +0.7 898,617 + +1.5 898,617 + +2.6 898,617 + -0.3 898,617 + +1.1 898,617 + +0.2 898,617 + -0.5 898,617 + -2.7 898,617 + -1.0 898,617 + +0.9 898,617 + +1.4 898,617 + +1.8 898,618 - +1.6 898,618 - +0.0 898,618 - -1.0 898,618 - +2.0 898,618 - -0.1 898,618 - +0.8 898,618 - +0.2 898,618 - -2.8 898,618 - +2.3 898,618 - -1.4 898,618 - -1.1 898,618 - +1.3 898,619 + +0.0 898,619 + +2.0 898,619 + +1.3 898,619 + -0.8 898,619 + -1.1 898,619 + -0.7 898,620 - -2.1 898,620 - -1.3 898,620 - +0.8 898,620 - +1.0 898,625 + -2.1 898,704 - +1.3 898,704 - +1.1 898,704 - +0.6 898,704 - -2.9 898,747 + -2.0 898,811 + +1.1 898,811 + +1.4 898,812 - +0.7 898,812 - +1.6 898,812 - -0.3 898,846 - +0.9 898,846 - +0.8 898,846 - -0.5 898,846 - +2.2 898,950 + PFLU_RS03980 0.18 +2.0 898,950 + PFLU_RS03980 0.18 +3.0 898,950 + PFLU_RS03980 0.18 +2.9 898,950 + PFLU_RS03980 0.18 -1.5 898,950 + PFLU_RS03980 0.18 +0.0 898,951 - PFLU_RS03980 0.19 +0.8 898,951 - PFLU_RS03980 0.19 +1.0 898,951 - PFLU_RS03980 0.19 +2.0 898,951 - PFLU_RS03980 0.19 +1.0 898,951 - PFLU_RS03980 0.19 -1.1 898,951 - PFLU_RS03980 0.19 +1.2 898,951 - PFLU_RS03980 0.19 +0.6 898,951 - PFLU_RS03980 0.19 +1.2 898,951 - PFLU_RS03980 0.19 +2.0 898,951 - PFLU_RS03980 0.19 +2.0 898,951 - PFLU_RS03980 0.19 +1.7 899,035 + PFLU_RS03980 0.34 +1.4 899,035 + PFLU_RS03980 0.34 +0.0 899,036 - PFLU_RS03980 0.34 +1.0 899,036 - PFLU_RS03980 0.34 +1.6 899,036 - PFLU_RS03980 0.34 +1.3 899,094 + PFLU_RS03980 0.44 +0.5 899,111 + PFLU_RS03980 0.47 +0.9 899,112 - PFLU_RS03980 0.47 +0.5 899,112 - PFLU_RS03980 0.47 +1.2 899,112 - PFLU_RS03980 0.47 +1.6 899,206 - PFLU_RS03980 0.64 +1.7 899,236 + PFLU_RS03980 0.69 -1.3 899,236 + PFLU_RS03980 0.69 +1.1 899,236 + PFLU_RS03980 0.69 +2.2 899,237 - PFLU_RS03980 0.69 +1.0 899,237 - PFLU_RS03980 0.69 +3.2 899,289 + PFLU_RS03980 0.79 +1.9 899,289 + PFLU_RS03980 0.79 +0.2 899,289 + PFLU_RS03980 0.79 -0.8 899,289 + PFLU_RS03980 0.79 +1.8 899,289 + PFLU_RS03980 0.79 +1.0 899,289 + PFLU_RS03980 0.79 +1.6 899,289 + PFLU_RS03980 0.79 +1.4 899,290 - PFLU_RS03980 0.79 +1.1 899,290 - PFLU_RS03980 0.79 +1.1 899,434 + +1.6 899,661 + PFLU_RS03985 0.30 +3.0 899,661 + PFLU_RS03985 0.30 +0.0 899,661 + PFLU_RS03985 0.30 -0.0 899,661 + PFLU_RS03985 0.30 +0.8 899,661 + PFLU_RS03985 0.30 +0.6 899,661 + PFLU_RS03985 0.30 +0.5 899,661 + PFLU_RS03985 0.30 +1.0 899,662 - PFLU_RS03985 0.31 -2.0 899,662 - PFLU_RS03985 0.31 -1.1 899,662 - PFLU_RS03985 0.31 +0.5 899,662 - PFLU_RS03985 0.31 +2.0 899,662 - PFLU_RS03985 0.31 -2.0 899,662 - PFLU_RS03985 0.31 -2.6 899,662 - PFLU_RS03985 0.31 +1.9 899,832 + PFLU_RS03985 0.51 -2.8 899,833 - PFLU_RS03985 0.51 +2.2 899,862 + PFLU_RS03985 0.54 -0.2 899,863 - PFLU_RS03985 0.55 -0.2 899,863 - PFLU_RS03985 0.55 -0.3 900,139 + PFLU_RS03985 0.88 -0.1 900,139 + PFLU_RS03985 0.88 +1.1 900,139 + PFLU_RS03985 0.88 +0.5 900,207 + -0.4 900,207 + +0.0 900,207 + -1.5 900,207 + -1.5 900,208 - -0.8 900,283 - +0.3 900,283 - -2.9 900,283 - +0.3 900,380 + +0.5 900,380 + -2.5 900,380 + +0.2 900,381 - -1.3 900,381 - +0.5 900,381 - +0.8 900,385 + +0.4 900,386 - -0.2
Or see this region's nucleotide sequence