Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21880 and BWI76_RS21885 are separated by 10 nucleotides BWI76_RS21885 and BWI76_RS21890 are separated by 12 nucleotides
BWI76_RS21880: BWI76_RS21880 - agmatinase, at 4,572,269 to 4,573,219
_RS21880
BWI76_RS21885: BWI76_RS21885 - AP endonuclease, family 2, at 4,573,230 to 4,574,078
_RS21885
BWI76_RS21890: BWI76_RS21890 - oxidoreductase, at 4,574,091 to 4,575,167
_RS21890
Position (kb) 4573
4574
4575 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4572.552 kb on + strand, within BWI76_RS21880 at 4572.562 kb on + strand at 4572.703 kb on + strand, within BWI76_RS21880 at 4572.841 kb on + strand, within BWI76_RS21880 at 4572.841 kb on + strand, within BWI76_RS21880 at 4572.849 kb on - strand, within BWI76_RS21880 at 4572.849 kb on - strand, within BWI76_RS21880 at 4572.892 kb on + strand, within BWI76_RS21880 at 4572.900 kb on - strand, within BWI76_RS21880 at 4572.900 kb on - strand at 4572.955 kb on + strand, within BWI76_RS21880 at 4573.006 kb on + strand, within BWI76_RS21880 at 4573.261 kb on - strand at 4573.264 kb on + strand at 4573.431 kb on - strand, within BWI76_RS21885 at 4573.513 kb on + strand, within BWI76_RS21885 at 4573.615 kb on + strand, within BWI76_RS21885 at 4573.791 kb on + strand, within BWI76_RS21885 at 4573.799 kb on - strand, within BWI76_RS21885 at 4573.799 kb on - strand, within BWI76_RS21885 at 4573.890 kb on - strand, within BWI76_RS21885 at 4574.040 kb on - strand at 4574.323 kb on + strand, within BWI76_RS21890 at 4574.441 kb on + strand, within BWI76_RS21890 at 4574.449 kb on - strand, within BWI76_RS21890 at 4574.524 kb on + strand, within BWI76_RS21890 at 4574.655 kb on + strand, within BWI76_RS21890 at 4574.716 kb on - strand, within BWI76_RS21890 at 4575.036 kb on + strand, within BWI76_RS21890 at 4575.044 kb on - strand, within BWI76_RS21890 at 4575.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,572,552 + BWI76_RS21880 0.30 +0.0 4,572,562 + -0.1 4,572,703 + BWI76_RS21880 0.46 -0.8 4,572,841 + BWI76_RS21880 0.60 -0.1 4,572,841 + BWI76_RS21880 0.60 +0.4 4,572,849 - BWI76_RS21880 0.61 +0.4 4,572,849 - BWI76_RS21880 0.61 +0.1 4,572,892 + BWI76_RS21880 0.66 -0.1 4,572,900 - BWI76_RS21880 0.66 +1.0 4,572,900 - -0.5 4,572,955 + BWI76_RS21880 0.72 +0.0 4,573,006 + BWI76_RS21880 0.77 -2.8 4,573,261 - +0.3 4,573,264 + +0.2 4,573,431 - BWI76_RS21885 0.24 +1.0 4,573,513 + BWI76_RS21885 0.33 +1.2 4,573,615 + BWI76_RS21885 0.45 +0.4 4,573,791 + BWI76_RS21885 0.66 +0.3 4,573,799 - BWI76_RS21885 0.67 +0.8 4,573,799 - BWI76_RS21885 0.67 +0.5 4,573,890 - BWI76_RS21885 0.78 +0.8 4,574,040 - +0.8 4,574,323 + BWI76_RS21890 0.22 +1.0 4,574,441 + BWI76_RS21890 0.32 -1.1 4,574,449 - BWI76_RS21890 0.33 -0.4 4,574,524 + BWI76_RS21890 0.40 +0.4 4,574,655 + BWI76_RS21890 0.52 +0.5 4,574,716 - BWI76_RS21890 0.58 +0.5 4,575,036 + BWI76_RS21890 0.88 -0.1 4,575,044 - BWI76_RS21890 0.88 -2.6 4,575,068 + +0.3
Or see this region's nucleotide sequence