Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21875 and BWI76_RS21880 are separated by 116 nucleotides BWI76_RS21880 and BWI76_RS21885 are separated by 10 nucleotides BWI76_RS21885 and BWI76_RS21890 are separated by 12 nucleotides
BWI76_RS21875: BWI76_RS21875 - LysR family transcriptional regulator, at 4,571,241 to 4,572,152
_RS21875
BWI76_RS21880: BWI76_RS21880 - agmatinase, at 4,572,269 to 4,573,219
_RS21880
BWI76_RS21885: BWI76_RS21885 - AP endonuclease, family 2, at 4,573,230 to 4,574,078
_RS21885
BWI76_RS21890: BWI76_RS21890 - oxidoreductase, at 4,574,091 to 4,575,167
_RS21890
Position (kb) 4572
4573
4574 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4571.274 kb on - strand at 4571.274 kb on - strand at 4571.275 kb on - strand at 4571.277 kb on - strand at 4571.293 kb on + strand at 4571.294 kb on + strand at 4571.303 kb on + strand at 4571.309 kb on + strand at 4571.310 kb on - strand at 4571.311 kb on - strand at 4571.311 kb on - strand at 4571.317 kb on - strand at 4571.334 kb on - strand, within BWI76_RS21875 at 4571.396 kb on + strand, within BWI76_RS21875 at 4571.401 kb on + strand, within BWI76_RS21875 at 4571.407 kb on + strand, within BWI76_RS21875 at 4571.453 kb on + strand, within BWI76_RS21875 at 4571.460 kb on - strand, within BWI76_RS21875 at 4571.491 kb on + strand, within BWI76_RS21875 at 4571.562 kb on - strand, within BWI76_RS21875 at 4571.619 kb on + strand, within BWI76_RS21875 at 4571.626 kb on + strand, within BWI76_RS21875 at 4571.626 kb on + strand, within BWI76_RS21875 at 4571.634 kb on - strand, within BWI76_RS21875 at 4571.875 kb on + strand, within BWI76_RS21875 at 4571.974 kb on - strand, within BWI76_RS21875 at 4571.974 kb on - strand, within BWI76_RS21875 at 4572.084 kb on + strand at 4572.552 kb on + strand, within BWI76_RS21880 at 4572.562 kb on + strand at 4572.703 kb on + strand, within BWI76_RS21880 at 4572.841 kb on + strand, within BWI76_RS21880 at 4572.841 kb on + strand, within BWI76_RS21880 at 4572.849 kb on - strand, within BWI76_RS21880 at 4572.849 kb on - strand, within BWI76_RS21880 at 4572.892 kb on + strand, within BWI76_RS21880 at 4572.900 kb on - strand, within BWI76_RS21880 at 4572.900 kb on - strand at 4572.955 kb on + strand, within BWI76_RS21880 at 4573.006 kb on + strand, within BWI76_RS21880 at 4573.261 kb on - strand at 4573.264 kb on + strand at 4573.431 kb on - strand, within BWI76_RS21885 at 4573.513 kb on + strand, within BWI76_RS21885 at 4573.615 kb on + strand, within BWI76_RS21885 at 4573.791 kb on + strand, within BWI76_RS21885 at 4573.799 kb on - strand, within BWI76_RS21885 at 4573.799 kb on - strand, within BWI76_RS21885 at 4573.890 kb on - strand, within BWI76_RS21885 at 4574.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,571,274 - +0.0 4,571,274 - -2.3 4,571,275 - -0.6 4,571,277 - +0.8 4,571,293 + -0.7 4,571,294 + -0.3 4,571,303 + +0.1 4,571,309 + -2.1 4,571,310 - +0.2 4,571,311 - -0.0 4,571,311 - -0.3 4,571,317 - -1.0 4,571,334 - BWI76_RS21875 0.10 +0.3 4,571,396 + BWI76_RS21875 0.17 -0.7 4,571,401 + BWI76_RS21875 0.18 +0.7 4,571,407 + BWI76_RS21875 0.18 +0.9 4,571,453 + BWI76_RS21875 0.23 +0.6 4,571,460 - BWI76_RS21875 0.24 -0.0 4,571,491 + BWI76_RS21875 0.27 +1.1 4,571,562 - BWI76_RS21875 0.35 +0.1 4,571,619 + BWI76_RS21875 0.41 +0.5 4,571,626 + BWI76_RS21875 0.42 -0.1 4,571,626 + BWI76_RS21875 0.42 +1.0 4,571,634 - BWI76_RS21875 0.43 -0.2 4,571,875 + BWI76_RS21875 0.70 -0.1 4,571,974 - BWI76_RS21875 0.80 -1.1 4,571,974 - BWI76_RS21875 0.80 -0.4 4,572,084 + -1.6 4,572,552 + BWI76_RS21880 0.30 +0.0 4,572,562 + -0.1 4,572,703 + BWI76_RS21880 0.46 -0.8 4,572,841 + BWI76_RS21880 0.60 -0.1 4,572,841 + BWI76_RS21880 0.60 +0.4 4,572,849 - BWI76_RS21880 0.61 +0.4 4,572,849 - BWI76_RS21880 0.61 +0.1 4,572,892 + BWI76_RS21880 0.66 -0.1 4,572,900 - BWI76_RS21880 0.66 +1.0 4,572,900 - -0.5 4,572,955 + BWI76_RS21880 0.72 +0.0 4,573,006 + BWI76_RS21880 0.77 -2.8 4,573,261 - +0.3 4,573,264 + +0.2 4,573,431 - BWI76_RS21885 0.24 +1.0 4,573,513 + BWI76_RS21885 0.33 +1.2 4,573,615 + BWI76_RS21885 0.45 +0.4 4,573,791 + BWI76_RS21885 0.66 +0.3 4,573,799 - BWI76_RS21885 0.67 +0.8 4,573,799 - BWI76_RS21885 0.67 +0.5 4,573,890 - BWI76_RS21885 0.78 +0.8 4,574,040 - +0.8
Or see this region's nucleotide sequence