Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21520 and BWI76_RS21525 are separated by 18 nucleotides BWI76_RS21525 and BWI76_RS21530 are separated by 215 nucleotides BWI76_RS21530 and BWI76_RS21535 are separated by 164 nucleotides BWI76_RS21535 and BWI76_RS21540 are separated by 18 nucleotides
BWI76_RS21520: BWI76_RS21520 - ribosome maturation factor RimM, at 4,506,644 to 4,507,192
_RS21520
BWI76_RS21525: BWI76_RS21525 - 30S ribosomal protein S16, at 4,507,211 to 4,507,459
_RS21525
BWI76_RS21530: BWI76_RS21530 - signal recognition particle protein, at 4,507,675 to 4,509,042
_RS21530
BWI76_RS21535: BWI76_RS21535 - inner membrane protein YpjD, at 4,509,207 to 4,509,998
_RS21535
BWI76_RS21540: BWI76_RS21540 - membrane protein, at 4,510,017 to 4,511,306
_RS21540
Position (kb) 4507
4508
4509
4510 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4507.568 kb on + strand at 4507.606 kb on + strand at 4507.618 kb on - strand at 4509.113 kb on - strand at 4509.113 kb on - strand at 4509.145 kb on + strand at 4509.160 kb on + strand at 4509.160 kb on + strand at 4509.168 kb on - strand at 4509.168 kb on - strand at 4509.232 kb on - strand at 4509.500 kb on - strand, within BWI76_RS21535 at 4509.529 kb on + strand, within BWI76_RS21535 at 4509.615 kb on + strand, within BWI76_RS21535 at 4509.633 kb on - strand, within BWI76_RS21535 at 4509.754 kb on + strand, within BWI76_RS21535 at 4509.777 kb on - strand, within BWI76_RS21535 at 4509.777 kb on - strand, within BWI76_RS21535 at 4509.799 kb on - strand, within BWI76_RS21535 at 4509.930 kb on - strand at 4509.964 kb on - strand at 4510.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,507,568 + -0.6 4,507,606 + -2.5 4,507,618 - -0.8 4,509,113 - -0.4 4,509,113 - -1.1 4,509,145 + +3.9 4,509,160 + +1.3 4,509,160 + -0.1 4,509,168 - +1.9 4,509,168 - -0.1 4,509,232 - +2.0 4,509,500 - BWI76_RS21535 0.37 +1.4 4,509,529 + BWI76_RS21535 0.41 +0.2 4,509,615 + BWI76_RS21535 0.52 +1.1 4,509,633 - BWI76_RS21535 0.54 +1.8 4,509,754 + BWI76_RS21535 0.69 -0.5 4,509,777 - BWI76_RS21535 0.72 +2.6 4,509,777 - BWI76_RS21535 0.72 -2.2 4,509,799 - BWI76_RS21535 0.75 +1.9 4,509,930 - -1.1 4,509,964 - +1.0 4,510,036 - +3.4
Or see this region's nucleotide sequence