Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20710 and BWI76_RS20715 are separated by 96 nucleotides BWI76_RS20715 and BWI76_RS20720 are separated by 63 nucleotides BWI76_RS20720 and BWI76_RS20725 overlap by 14 nucleotides BWI76_RS20725 and BWI76_RS20730 are separated by 21 nucleotides
BWI76_RS20710: BWI76_RS20710 - dyp-type peroxidase family protein, at 4,331,895 to 4,332,794
_RS20710
BWI76_RS20715: BWI76_RS20715 - RpoE-regulated lipoprotein, at 4,332,891 to 4,333,466
_RS20715
BWI76_RS20720: BWI76_RS20720 - hypothetical protein, at 4,333,530 to 4,333,979
_RS20720
BWI76_RS20725: BWI76_RS20725 - GNAT family acetyltransferase, at 4,333,966 to 4,334,391
_RS20725
BWI76_RS20730: BWI76_RS20730 - hypothetical protein, at 4,334,413 to 4,334,610
_RS20730
Position (kb) 4332
4333
4334 Strain fitness (log2 ratio) -2
-1
0
1 at 4331.916 kb on - strand at 4332.025 kb on - strand at 4332.106 kb on + strand, within BWI76_RS20710 at 4332.157 kb on - strand, within BWI76_RS20710 at 4332.157 kb on - strand, within BWI76_RS20710 at 4332.245 kb on - strand, within BWI76_RS20710 at 4332.251 kb on + strand, within BWI76_RS20710 at 4332.392 kb on + strand, within BWI76_RS20710 at 4332.482 kb on - strand, within BWI76_RS20710 at 4333.346 kb on + strand, within BWI76_RS20715 at 4333.453 kb on - strand at 4333.570 kb on - strand at 4333.570 kb on - strand at 4333.842 kb on - strand, within BWI76_RS20720 at 4333.901 kb on - strand, within BWI76_RS20720 at 4334.034 kb on - strand, within BWI76_RS20725 at 4334.262 kb on + strand, within BWI76_RS20725 at 4334.325 kb on - strand, within BWI76_RS20725 at 4334.337 kb on + strand, within BWI76_RS20725 at 4334.345 kb on + strand, within BWI76_RS20725 at 4334.394 kb on - strand at 4334.403 kb on + strand at 4334.403 kb on - strand at 4334.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,331,916 - -0.0 4,332,025 - +0.4 4,332,106 + BWI76_RS20710 0.23 -0.9 4,332,157 - BWI76_RS20710 0.29 +0.6 4,332,157 - BWI76_RS20710 0.29 -1.2 4,332,245 - BWI76_RS20710 0.39 -1.5 4,332,251 + BWI76_RS20710 0.40 -0.5 4,332,392 + BWI76_RS20710 0.55 -0.3 4,332,482 - BWI76_RS20710 0.65 +1.1 4,333,346 + BWI76_RS20715 0.79 +0.5 4,333,453 - -0.6 4,333,570 - -1.5 4,333,570 - +0.6 4,333,842 - BWI76_RS20720 0.69 -2.7 4,333,901 - BWI76_RS20720 0.82 -0.7 4,334,034 - BWI76_RS20725 0.16 +0.8 4,334,262 + BWI76_RS20725 0.69 -0.8 4,334,325 - BWI76_RS20725 0.84 +0.2 4,334,337 + BWI76_RS20725 0.87 -0.5 4,334,345 + BWI76_RS20725 0.89 +0.4 4,334,394 - -0.1 4,334,403 + +1.1 4,334,403 - +1.0 4,334,420 - +0.2
Or see this region's nucleotide sequence