Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09095 and BWI76_RS09100 are separated by 37 nucleotides BWI76_RS09100 and BWI76_RS09105 are separated by 52 nucleotides BWI76_RS09105 and BWI76_RS09110 are separated by 1 nucleotides
BWI76_RS09095: BWI76_RS09095 - glutathione ABC transporter ATP-binding protein GsiA, at 1,920,217 to 1,922,070
_RS09095
BWI76_RS09100: BWI76_RS09100 - glutathione ABC transporter substrate-binding protein GsiB, at 1,922,108 to 1,923,646
_RS09100
BWI76_RS09105: BWI76_RS09105 - glutathione ABC transporter permease GsiC, at 1,923,699 to 1,924,619
_RS09105
BWI76_RS09110: BWI76_RS09110 - glutathione ABC transporter permease GsiD, at 1,924,621 to 1,925,532
_RS09110
Position (kb) 1922
1923
1924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1921.154 kb on + strand, within BWI76_RS09095 at 1921.255 kb on + strand, within BWI76_RS09095 at 1921.436 kb on - strand, within BWI76_RS09095 at 1921.998 kb on - strand at 1922.048 kb on + strand at 1922.112 kb on - strand at 1922.267 kb on + strand, within BWI76_RS09100 at 1922.338 kb on + strand, within BWI76_RS09100 at 1922.340 kb on + strand, within BWI76_RS09100 at 1922.373 kb on - strand, within BWI76_RS09100 at 1922.390 kb on + strand, within BWI76_RS09100 at 1922.482 kb on + strand, within BWI76_RS09100 at 1922.996 kb on - strand, within BWI76_RS09100 at 1923.155 kb on + strand, within BWI76_RS09100 at 1923.201 kb on + strand, within BWI76_RS09100 at 1923.496 kb on + strand at 1923.504 kb on - strand at 1923.504 kb on - strand at 1923.504 kb on - strand at 1923.992 kb on + strand, within BWI76_RS09105 at 1924.096 kb on - strand, within BWI76_RS09105 at 1924.452 kb on + strand, within BWI76_RS09105
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 1,921,154 + BWI76_RS09095 0.51 -0.8 1,921,255 + BWI76_RS09095 0.56 +0.6 1,921,436 - BWI76_RS09095 0.66 +0.3 1,921,998 - -0.2 1,922,048 + -0.5 1,922,112 - -0.1 1,922,267 + BWI76_RS09100 0.10 -0.1 1,922,338 + BWI76_RS09100 0.15 +0.1 1,922,340 + BWI76_RS09100 0.15 -0.7 1,922,373 - BWI76_RS09100 0.17 +2.0 1,922,390 + BWI76_RS09100 0.18 +0.1 1,922,482 + BWI76_RS09100 0.24 +0.6 1,922,996 - BWI76_RS09100 0.58 +0.6 1,923,155 + BWI76_RS09100 0.68 +1.4 1,923,201 + BWI76_RS09100 0.71 +2.9 1,923,496 + +1.0 1,923,504 - -1.2 1,923,504 - +1.0 1,923,504 - +0.2 1,923,992 + BWI76_RS09105 0.32 +0.2 1,924,096 - BWI76_RS09105 0.43 -2.8 1,924,452 + BWI76_RS09105 0.82 +0.3
Or see this region's nucleotide sequence