Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08785 and BWI76_RS08790 are separated by 301 nucleotides BWI76_RS08790 and BWI76_RS08795 are separated by 4 nucleotides BWI76_RS08795 and BWI76_RS08800 overlap by 4 nucleotides
BWI76_RS08785: BWI76_RS08785 - excinuclease ABC subunit B, at 1,851,427 to 1,853,442
_RS08785
BWI76_RS08790: BWI76_RS08790 - two-component sensor histidine kinase, at 1,853,744 to 1,854,841
_RS08790
BWI76_RS08795: BWI76_RS08795 - DNA-binding response regulator, at 1,854,846 to 1,855,517
_RS08795
BWI76_RS08800: BWI76_RS08800 - phosphoethanolamine transferase EptA, at 1,855,514 to 1,857,157
_RS08800
Position (kb) 1853
1854
1855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1852.951 kb on + strand, within BWI76_RS08785 at 1853.174 kb on + strand, within BWI76_RS08785 at 1853.232 kb on - strand, within BWI76_RS08785 at 1853.424 kb on + strand at 1853.458 kb on + strand at 1853.572 kb on - strand at 1853.578 kb on - strand at 1853.666 kb on - strand at 1853.800 kb on + strand at 1853.856 kb on - strand, within BWI76_RS08790 at 1853.876 kb on + strand, within BWI76_RS08790 at 1854.135 kb on - strand, within BWI76_RS08790 at 1854.340 kb on + strand, within BWI76_RS08790 at 1854.340 kb on + strand, within BWI76_RS08790 at 1854.370 kb on - strand, within BWI76_RS08790 at 1854.619 kb on + strand, within BWI76_RS08790 at 1854.629 kb on - strand, within BWI76_RS08790 at 1854.638 kb on + strand, within BWI76_RS08790 at 1854.821 kb on - strand at 1854.851 kb on - strand at 1854.893 kb on - strand at 1854.929 kb on + strand, within BWI76_RS08795 at 1854.937 kb on - strand, within BWI76_RS08795 at 1854.952 kb on + strand, within BWI76_RS08795 at 1855.344 kb on + strand, within BWI76_RS08795 at 1855.586 kb on - strand at 1855.839 kb on - strand, within BWI76_RS08800
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 1,852,951 + BWI76_RS08785 0.76 +0.1 1,853,174 + BWI76_RS08785 0.87 +0.6 1,853,232 - BWI76_RS08785 0.90 -2.8 1,853,424 + +0.4 1,853,458 + -0.2 1,853,572 - -0.5 1,853,578 - +0.8 1,853,666 - +0.6 1,853,800 + -0.2 1,853,856 - BWI76_RS08790 0.10 -0.6 1,853,876 + BWI76_RS08790 0.12 -1.3 1,854,135 - BWI76_RS08790 0.36 -1.2 1,854,340 + BWI76_RS08790 0.54 -1.7 1,854,340 + BWI76_RS08790 0.54 -1.0 1,854,370 - BWI76_RS08790 0.57 -0.6 1,854,619 + BWI76_RS08790 0.80 -0.6 1,854,629 - BWI76_RS08790 0.81 -1.1 1,854,638 + BWI76_RS08790 0.81 +2.4 1,854,821 - -0.4 1,854,851 - -0.6 1,854,893 - -0.5 1,854,929 + BWI76_RS08795 0.12 -1.7 1,854,937 - BWI76_RS08795 0.14 -1.7 1,854,952 + BWI76_RS08795 0.16 -1.7 1,855,344 + BWI76_RS08795 0.74 -1.1 1,855,586 - +1.0 1,855,839 - BWI76_RS08800 0.20 -0.1
Or see this region's nucleotide sequence