Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03320

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03315 and BWI76_RS03320 are separated by 56 nucleotidesBWI76_RS03320 and BWI76_RS03325 are separated by 196 nucleotides BWI76_RS03315: BWI76_RS03315 - clavaldehyde dehydrogenase, at 683,133 to 683,900 _RS03315 BWI76_RS03320: BWI76_RS03320 - alcohol dehydrogenase, at 683,957 to 685,015 _RS03320 BWI76_RS03325: BWI76_RS03325 - LysR family transcriptional regulator, at 685,212 to 686,105 _RS03325 Position (kb) 683 684 685 686Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 683.035 kb on + strandat 683.180 kb on - strandat 683.424 kb on - strand, within BWI76_RS03315at 683.497 kb on + strandat 683.548 kb on + strand, within BWI76_RS03315at 683.554 kb on + strand, within BWI76_RS03315at 683.562 kb on - strand, within BWI76_RS03315at 683.562 kb on - strand, within BWI76_RS03315at 683.844 kb on + strandat 683.934 kb on + strandat 683.947 kb on + strandat 683.953 kb on - strandat 683.965 kb on - strandat 683.981 kb on - strandat 684.000 kb on - strandat 684.000 kb on - strandat 684.086 kb on - strand, within BWI76_RS03320at 684.104 kb on + strand, within BWI76_RS03320at 684.114 kb on + strand, within BWI76_RS03320at 684.130 kb on + strand, within BWI76_RS03320at 684.159 kb on + strand, within BWI76_RS03320at 684.196 kb on + strand, within BWI76_RS03320at 684.196 kb on + strand, within BWI76_RS03320at 684.396 kb on + strandat 684.431 kb on + strand, within BWI76_RS03320at 684.461 kb on + strand, within BWI76_RS03320at 684.492 kb on + strand, within BWI76_RS03320at 684.510 kb on + strand, within BWI76_RS03320at 684.519 kb on - strand, within BWI76_RS03320at 684.546 kb on + strand, within BWI76_RS03320at 684.566 kb on - strand, within BWI76_RS03320at 684.589 kb on + strand, within BWI76_RS03320at 684.597 kb on + strand, within BWI76_RS03320at 684.606 kb on - strand, within BWI76_RS03320at 684.609 kb on + strand, within BWI76_RS03320at 684.708 kb on + strand, within BWI76_RS03320at 684.712 kb on + strand, within BWI76_RS03320at 684.752 kb on + strand, within BWI76_RS03320at 684.827 kb on + strand, within BWI76_RS03320at 684.833 kb on - strand, within BWI76_RS03320at 684.960 kb on - strandat 684.963 kb on + strandat 684.986 kb on + strandat 685.040 kb on - strandat 685.040 kb on - strandat 685.056 kb on + strandat 685.056 kb on + strandat 685.064 kb on + strandat 685.064 kb on - strandat 685.064 kb on - strandat 685.097 kb on - strandat 685.161 kb on - strandat 685.170 kb on + strandat 685.178 kb on - strandat 685.187 kb on + strandat 685.222 kb on + strandat 685.225 kb on + strandat 685.225 kb on + strandat 685.232 kb on + strandat 685.233 kb on - strandat 685.233 kb on - strandat 685.243 kb on + strandat 685.243 kb on - strandat 685.249 kb on - strandat 685.289 kb on + strandat 685.305 kb on + strand, within BWI76_RS03325at 685.305 kb on + strand, within BWI76_RS03325at 685.305 kb on + strand, within BWI76_RS03325at 685.313 kb on - strand, within BWI76_RS03325at 685.320 kb on + strandat 685.336 kb on - strand, within BWI76_RS03325at 685.354 kb on + strand, within BWI76_RS03325at 685.363 kb on + strand, within BWI76_RS03325at 685.371 kb on - strand, within BWI76_RS03325at 685.371 kb on - strand, within BWI76_RS03325at 685.373 kb on + strand, within BWI76_RS03325at 685.420 kb on + strand, within BWI76_RS03325at 685.430 kb on + strand, within BWI76_RS03325at 685.430 kb on + strand, within BWI76_RS03325at 685.438 kb on - strand, within BWI76_RS03325at 685.465 kb on + strand, within BWI76_RS03325at 685.472 kb on + strand, within BWI76_RS03325at 685.481 kb on + strand, within BWI76_RS03325at 685.488 kb on + strand, within BWI76_RS03325at 685.489 kb on - strand, within BWI76_RS03325at 685.489 kb on - strand, within BWI76_RS03325at 685.586 kb on + strand, within BWI76_RS03325at 685.690 kb on + strand, within BWI76_RS03325at 685.952 kb on + strand, within BWI76_RS03325at 685.952 kb on + strand, within BWI76_RS03325at 685.952 kb on + strand, within BWI76_RS03325at 685.960 kb on - strand, within BWI76_RS03325at 685.960 kb on - strand, within BWI76_RS03325at 685.960 kb on - strand, within BWI76_RS03325at 685.960 kb on - strand, within BWI76_RS03325

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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683,035 + -1.9
683,180 - +0.7
683,424 - BWI76_RS03315 0.38 +0.5
683,497 + +2.7
683,548 + BWI76_RS03315 0.54 -0.2
683,554 + BWI76_RS03315 0.55 +0.5
683,562 - BWI76_RS03315 0.56 +1.0
683,562 - BWI76_RS03315 0.56 -0.8
683,844 + +0.1
683,934 + -2.8
683,947 + +0.3
683,953 - +0.6
683,965 - -1.4
683,981 - +2.9
684,000 - -1.3
684,000 - -0.4
684,086 - BWI76_RS03320 0.12 -0.7
684,104 + BWI76_RS03320 0.14 -0.6
684,114 + BWI76_RS03320 0.15 +0.4
684,130 + BWI76_RS03320 0.16 +1.2
684,159 + BWI76_RS03320 0.19 -0.2
684,196 + BWI76_RS03320 0.23 +0.2
684,196 + BWI76_RS03320 0.23 +0.9
684,396 + +0.9
684,431 + BWI76_RS03320 0.45 +0.2
684,461 + BWI76_RS03320 0.48 +0.4
684,492 + BWI76_RS03320 0.51 +2.8
684,510 + BWI76_RS03320 0.52 -0.5
684,519 - BWI76_RS03320 0.53 -0.5
684,546 + BWI76_RS03320 0.56 +0.4
684,566 - BWI76_RS03320 0.58 -0.0
684,589 + BWI76_RS03320 0.60 +0.6
684,597 + BWI76_RS03320 0.60 +0.8
684,606 - BWI76_RS03320 0.61 +1.1
684,609 + BWI76_RS03320 0.62 +3.1
684,708 + BWI76_RS03320 0.71 +0.9
684,712 + BWI76_RS03320 0.71 +0.9
684,752 + BWI76_RS03320 0.75 +0.2
684,827 + BWI76_RS03320 0.82 +1.3
684,833 - BWI76_RS03320 0.83 -0.1
684,960 - -0.1
684,963 + -0.1
684,986 + +0.3
685,040 - -1.1
685,040 - +0.3
685,056 + -0.3
685,056 + +0.0
685,064 + -1.1
685,064 - -2.3
685,064 - -1.1
685,097 - -2.4
685,161 - -0.3
685,170 + +0.1
685,178 - +0.4
685,187 + -0.1
685,222 + +0.2
685,225 + +0.4
685,225 + +0.2
685,232 + +0.0
685,233 - +0.1
685,233 - +0.9
685,243 + +2.0
685,243 - -1.0
685,249 - -0.5
685,289 + -0.1
685,305 + BWI76_RS03325 0.10 +0.6
685,305 + BWI76_RS03325 0.10 -2.4
685,305 + BWI76_RS03325 0.10 -1.1
685,313 - BWI76_RS03325 0.11 +0.3
685,320 + -1.1
685,336 - BWI76_RS03325 0.14 -0.7
685,354 + BWI76_RS03325 0.16 +0.1
685,363 + BWI76_RS03325 0.17 -0.1
685,371 - BWI76_RS03325 0.18 +0.1
685,371 - BWI76_RS03325 0.18 +0.6
685,373 + BWI76_RS03325 0.18 +0.9
685,420 + BWI76_RS03325 0.23 -0.3
685,430 + BWI76_RS03325 0.24 +2.8
685,430 + BWI76_RS03325 0.24 +0.2
685,438 - BWI76_RS03325 0.25 -0.7
685,465 + BWI76_RS03325 0.28 -1.1
685,472 + BWI76_RS03325 0.29 +0.0
685,481 + BWI76_RS03325 0.30 +0.9
685,488 + BWI76_RS03325 0.31 -0.0
685,489 - BWI76_RS03325 0.31 -0.4
685,489 - BWI76_RS03325 0.31 -0.8
685,586 + BWI76_RS03325 0.42 +1.0
685,690 + BWI76_RS03325 0.53 -0.3
685,952 + BWI76_RS03325 0.83 -0.4
685,952 + BWI76_RS03325 0.83 +0.2
685,952 + BWI76_RS03325 0.83 +1.1
685,960 - BWI76_RS03325 0.84 +0.4
685,960 - BWI76_RS03325 0.84 -0.2
685,960 - BWI76_RS03325 0.84 -0.0
685,960 - BWI76_RS03325 0.84 -0.7

Or see this region's nucleotide sequence