Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02585

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS02575 and BWI76_RS02580 are separated by 85 nucleotidesBWI76_RS02580 and BWI76_RS02585 are separated by 45 nucleotidesBWI76_RS02585 and BWI76_RS02590 are separated by 105 nucleotides BWI76_RS02575: BWI76_RS02575 - exoribonuclease R, at 526,736 to 529,183 _RS02575 BWI76_RS02580: BWI76_RS02580 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase, at 529,269 to 530,000 _RS02580 BWI76_RS02585: BWI76_RS02585 - hypothetical protein, at 530,046 to 530,399 _RS02585 BWI76_RS02590: BWI76_RS02590 - isovaleryl-CoA dehydrogenase, at 530,505 to 532,142 _RS02590 Position (kb) 530 531Strain fitness (log2 ratio) -1 0 1at 529.089 kb on - strandat 529.149 kb on - strandat 529.667 kb on + strand, within BWI76_RS02580at 529.792 kb on + strand, within BWI76_RS02580at 529.804 kb on + strand, within BWI76_RS02580at 529.971 kb on - strandat 530.042 kb on - strandat 530.042 kb on - strandat 530.114 kb on - strand, within BWI76_RS02585at 530.114 kb on - strand, within BWI76_RS02585at 530.253 kb on + strand, within BWI76_RS02585at 530.286 kb on - strand, within BWI76_RS02585at 530.351 kb on + strand, within BWI76_RS02585at 530.353 kb on + strand, within BWI76_RS02585at 530.526 kb on - strandat 530.552 kb on - strandat 530.827 kb on + strand, within BWI76_RS02590at 530.931 kb on - strand, within BWI76_RS02590at 531.256 kb on - strand, within BWI76_RS02590at 531.261 kb on + strand, within BWI76_RS02590at 531.264 kb on - strand, within BWI76_RS02590at 531.351 kb on + strand, within BWI76_RS02590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
remove
529,089 - +1.0
529,149 - -0.7
529,667 + BWI76_RS02580 0.54 +1.0
529,792 + BWI76_RS02580 0.71 +1.0
529,804 + BWI76_RS02580 0.73 +0.1
529,971 - +0.4
530,042 - +1.0
530,042 - -0.6
530,114 - BWI76_RS02585 0.19 -0.2
530,114 - BWI76_RS02585 0.19 +0.5
530,253 + BWI76_RS02585 0.58 +0.4
530,286 - BWI76_RS02585 0.68 +1.0
530,351 + BWI76_RS02585 0.86 +0.6
530,353 + BWI76_RS02585 0.87 +1.0
530,526 - +0.2
530,552 - +1.0
530,827 + BWI76_RS02590 0.20 +0.6
530,931 - BWI76_RS02590 0.26 +0.7
531,256 - BWI76_RS02590 0.46 +1.3
531,261 + BWI76_RS02590 0.46 +0.2
531,264 - BWI76_RS02590 0.46 +1.6
531,351 + BWI76_RS02590 0.52 -1.4

Or see this region's nucleotide sequence