Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00475 and BWI76_RS00480 are separated by 128 nucleotides BWI76_RS00480 and BWI76_RS00485 are separated by 144 nucleotides
BWI76_RS00475: BWI76_RS00475 - sulfurtransferase FdhD, at 97,968 to 98,804
_RS00475
BWI76_RS00480: BWI76_RS00480 - hypothetical protein, at 98,933 to 99,145
_RS00480
BWI76_RS00485: BWI76_RS00485 - beta-xylosidase, at 99,290 to 100,801
_RS00485
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 97.944 kb on - strand at 98.110 kb on - strand, within BWI76_RS00475 at 98.237 kb on - strand, within BWI76_RS00475 at 98.312 kb on + strand, within BWI76_RS00475 at 98.315 kb on - strand, within BWI76_RS00475 at 98.386 kb on + strand, within BWI76_RS00475 at 98.443 kb on + strand, within BWI76_RS00475 at 98.499 kb on - strand, within BWI76_RS00475 at 98.529 kb on - strand, within BWI76_RS00475 at 98.560 kb on - strand, within BWI76_RS00475 at 98.561 kb on - strand, within BWI76_RS00475 at 98.652 kb on + strand, within BWI76_RS00475 at 98.861 kb on - strand at 98.891 kb on - strand at 99.041 kb on - strand, within BWI76_RS00480 at 99.058 kb on + strand, within BWI76_RS00480 at 99.058 kb on + strand, within BWI76_RS00480 at 99.058 kb on + strand, within BWI76_RS00480 at 99.154 kb on - strand at 99.289 kb on - strand at 99.410 kb on + strand at 99.616 kb on + strand, within BWI76_RS00485 at 99.651 kb on + strand, within BWI76_RS00485 at 99.651 kb on + strand, within BWI76_RS00485 at 99.659 kb on - strand, within BWI76_RS00485 at 99.659 kb on - strand, within BWI76_RS00485 at 99.834 kb on + strand, within BWI76_RS00485 at 99.911 kb on + strand, within BWI76_RS00485 at 99.929 kb on - strand, within BWI76_RS00485 at 99.931 kb on + strand, within BWI76_RS00485 at 99.956 kb on + strand, within BWI76_RS00485 at 99.956 kb on + strand, within BWI76_RS00485 at 99.956 kb on + strand, within BWI76_RS00485 at 99.992 kb on + strand, within BWI76_RS00485
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 97,944 - +2.9 98,110 - BWI76_RS00475 0.17 -0.1 98,237 - BWI76_RS00475 0.32 +0.3 98,312 + BWI76_RS00475 0.41 +2.5 98,315 - BWI76_RS00475 0.41 +0.8 98,386 + BWI76_RS00475 0.50 +1.3 98,443 + BWI76_RS00475 0.57 +0.7 98,499 - BWI76_RS00475 0.63 +0.6 98,529 - BWI76_RS00475 0.67 +0.9 98,560 - BWI76_RS00475 0.71 +1.6 98,561 - BWI76_RS00475 0.71 -1.8 98,652 + BWI76_RS00475 0.82 +1.0 98,861 - -0.2 98,891 - -2.3 99,041 - BWI76_RS00480 0.51 -1.4 99,058 + BWI76_RS00480 0.59 -0.5 99,058 + BWI76_RS00480 0.59 -0.2 99,058 + BWI76_RS00480 0.59 +1.1 99,154 - -0.3 99,289 - -0.9 99,410 + +1.4 99,616 + BWI76_RS00485 0.22 -0.0 99,651 + BWI76_RS00485 0.24 +0.2 99,651 + BWI76_RS00485 0.24 -0.8 99,659 - BWI76_RS00485 0.24 -2.1 99,659 - BWI76_RS00485 0.24 -0.5 99,834 + BWI76_RS00485 0.36 -0.5 99,911 + BWI76_RS00485 0.41 +1.5 99,929 - BWI76_RS00485 0.42 +0.7 99,931 + BWI76_RS00485 0.42 +0.2 99,956 + BWI76_RS00485 0.44 +0.5 99,956 + BWI76_RS00485 0.44 -0.7 99,956 + BWI76_RS00485 0.44 -0.2 99,992 + BWI76_RS00485 0.46 +0.5
Or see this region's nucleotide sequence