Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS16210 and HSERO_RS16215 overlap by 4 nucleotides HSERO_RS16215 and HSERO_RS16220 are separated by 12 nucleotides HSERO_RS16220 and HSERO_RS16225 are separated by 11 nucleotides
HSERO_RS16210: HSERO_RS16210 - hypothetical protein, at 3,697,022 to 3,697,873
_RS16210
HSERO_RS16215: HSERO_RS16215 - hypothetical protein, at 3,697,870 to 3,698,625
_RS16215
HSERO_RS16220: HSERO_RS16220 - hypothetical protein, at 3,698,638 to 3,699,108
_RS16220
HSERO_RS16225: HSERO_RS16225 - methyltransferase, at 3,699,120 to 3,700,439
_RS16225
Position (kb) 3698
3699
3700 Strain fitness (log2 ratio) -1
0
1 at 3697.806 kb on - strand at 3698.156 kb on + strand, within HSERO_RS16215 at 3698.247 kb on + strand, within HSERO_RS16215 at 3698.407 kb on + strand at 3698.512 kb on + strand, within HSERO_RS16215 at 3698.514 kb on + strand, within HSERO_RS16215 at 3698.550 kb on - strand at 3698.600 kb on - strand at 3698.686 kb on + strand at 3698.741 kb on + strand, within HSERO_RS16220 at 3698.828 kb on + strand, within HSERO_RS16220 at 3698.834 kb on - strand, within HSERO_RS16220 at 3698.930 kb on + strand, within HSERO_RS16220 at 3698.938 kb on - strand, within HSERO_RS16220 at 3699.092 kb on + strand at 3699.259 kb on + strand, within HSERO_RS16225 at 3699.267 kb on - strand, within HSERO_RS16225 at 3699.269 kb on + strand, within HSERO_RS16225 at 3699.406 kb on + strand, within HSERO_RS16225 at 3699.809 kb on + strand, within HSERO_RS16225 at 3699.837 kb on + strand, within HSERO_RS16225 at 3699.924 kb on + strand, within HSERO_RS16225 at 3700.018 kb on - strand, within HSERO_RS16225
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 3,697,806 - -0.5 3,698,156 + HSERO_RS16215 0.38 +1.0 3,698,247 + HSERO_RS16215 0.50 +0.1 3,698,407 + -0.2 3,698,512 + HSERO_RS16215 0.85 -0.1 3,698,514 + HSERO_RS16215 0.85 -0.1 3,698,550 - -0.3 3,698,600 - -0.6 3,698,686 + +1.2 3,698,741 + HSERO_RS16220 0.22 +0.4 3,698,828 + HSERO_RS16220 0.40 -0.2 3,698,834 - HSERO_RS16220 0.42 -1.3 3,698,930 + HSERO_RS16220 0.62 -0.8 3,698,938 - HSERO_RS16220 0.64 -0.5 3,699,092 + -0.4 3,699,259 + HSERO_RS16225 0.11 +0.2 3,699,267 - HSERO_RS16225 0.11 +0.0 3,699,269 + HSERO_RS16225 0.11 +0.1 3,699,406 + HSERO_RS16225 0.22 +0.0 3,699,809 + HSERO_RS16225 0.52 +0.1 3,699,837 + HSERO_RS16225 0.54 -0.3 3,699,924 + HSERO_RS16225 0.61 +0.6 3,700,018 - HSERO_RS16225 0.68 -0.4
Or see this region's nucleotide sequence