Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01880

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01870 and HSERO_RS01875 overlap by 4 nucleotidesHSERO_RS01875 and HSERO_RS01880 are separated by 3 nucleotidesHSERO_RS01880 and HSERO_RS01885 are separated by 406 nucleotides HSERO_RS01870: HSERO_RS01870 - ABC transporter permease, at 410,664 to 411,476 _RS01870 HSERO_RS01875: HSERO_RS01875 - hypothetical protein, at 411,473 to 411,757 _RS01875 HSERO_RS01880: HSERO_RS01880 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 411,761 to 412,384 _RS01880 HSERO_RS01885: HSERO_RS01885 - ribonucleotide-diphosphate reductase subunit alpha, at 412,791 to 415,775 _RS01885 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1at 410.789 kb on + strand, within HSERO_RS01870at 411.213 kb on - strand, within HSERO_RS01870at 411.253 kb on + strand, within HSERO_RS01870at 411.385 kb on + strand, within HSERO_RS01870at 411.385 kb on + strand, within HSERO_RS01870at 411.687 kb on + strand, within HSERO_RS01875at 411.713 kb on + strand, within HSERO_RS01875at 411.949 kb on - strand, within HSERO_RS01880at 412.163 kb on + strand, within HSERO_RS01880at 412.257 kb on + strand, within HSERO_RS01880at 412.267 kb on + strand, within HSERO_RS01880at 412.356 kb on + strandat 412.595 kb on - strandat 412.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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410,789 + HSERO_RS01870 0.15 +0.4
411,213 - HSERO_RS01870 0.68 -0.2
411,253 + HSERO_RS01870 0.72 +0.0
411,385 + HSERO_RS01870 0.89 -0.7
411,385 + HSERO_RS01870 0.89 -1.0
411,687 + HSERO_RS01875 0.75 -0.1
411,713 + HSERO_RS01875 0.84 +0.2
411,949 - HSERO_RS01880 0.30 -0.2
412,163 + HSERO_RS01880 0.64 -2.7
412,257 + HSERO_RS01880 0.79 -0.5
412,267 + HSERO_RS01880 0.81 -1.3
412,356 + +0.8
412,595 - -0.4
412,654 - -2.6

Or see this region's nucleotide sequence