Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27750 and BWI76_RS27755 are separated by 107 nucleotides BWI76_RS27755 and BWI76_RS27760 are separated by 102 nucleotides BWI76_RS27760 and BWI76_RS27765 are separated by 118 nucleotides
BWI76_RS27750: BWI76_RS27750 - PTS lactose/cellobiose family transporter subunit IIC, at 5,758,016 to 5,759,341
_RS27750
BWI76_RS27755: BWI76_RS27755 - molecular chaperone TorD, at 5,759,449 to 5,759,751
_RS27755
BWI76_RS27760: BWI76_RS27760 - lactam utilization protein LamB, at 5,759,854 to 5,761,233
_RS27760
BWI76_RS27765: BWI76_RS27765 - MFS transporter, at 5,761,352 to 5,762,533
_RS27765
Position (kb) 5759
5760
5761
5762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5758.854 kb on - strand, within BWI76_RS27750 at 5759.017 kb on - strand, within BWI76_RS27750 at 5759.017 kb on - strand, within BWI76_RS27750 at 5759.054 kb on - strand, within BWI76_RS27750 at 5759.069 kb on - strand, within BWI76_RS27750 at 5759.069 kb on - strand, within BWI76_RS27750 at 5759.074 kb on + strand, within BWI76_RS27750 at 5759.082 kb on - strand, within BWI76_RS27750 at 5759.089 kb on + strand at 5759.097 kb on - strand, within BWI76_RS27750 at 5759.097 kb on - strand, within BWI76_RS27750 at 5759.121 kb on + strand, within BWI76_RS27750 at 5759.129 kb on - strand, within BWI76_RS27750 at 5759.153 kb on - strand, within BWI76_RS27750 at 5759.209 kb on - strand at 5759.234 kb on + strand at 5759.234 kb on + strand at 5759.234 kb on + strand at 5759.239 kb on + strand at 5759.242 kb on - strand at 5759.242 kb on - strand at 5759.242 kb on - strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on - strand at 5759.267 kb on + strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.312 kb on + strand at 5759.318 kb on - strand at 5759.320 kb on - strand at 5759.320 kb on - strand at 5759.330 kb on - strand at 5759.342 kb on - strand at 5759.342 kb on - strand at 5759.435 kb on + strand at 5759.435 kb on + strand at 5759.443 kb on - strand at 5759.443 kb on - strand at 5759.489 kb on + strand, within BWI76_RS27755 at 5759.494 kb on + strand, within BWI76_RS27755 at 5759.503 kb on + strand, within BWI76_RS27755 at 5759.513 kb on + strand, within BWI76_RS27755 at 5759.513 kb on + strand, within BWI76_RS27755 at 5759.513 kb on + strand, within BWI76_RS27755 at 5759.513 kb on - strand, within BWI76_RS27755 at 5759.521 kb on - strand, within BWI76_RS27755 at 5759.521 kb on - strand, within BWI76_RS27755 at 5759.521 kb on - strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.531 kb on - strand, within BWI76_RS27755 at 5759.534 kb on - strand, within BWI76_RS27755 at 5759.534 kb on - strand, within BWI76_RS27755 at 5759.534 kb on - strand, within BWI76_RS27755 at 5759.534 kb on - strand, within BWI76_RS27755 at 5759.541 kb on + strand, within BWI76_RS27755 at 5759.549 kb on - strand, within BWI76_RS27755 at 5759.561 kb on + strand, within BWI76_RS27755 at 5759.584 kb on + strand, within BWI76_RS27755 at 5759.584 kb on + strand, within BWI76_RS27755 at 5759.585 kb on - strand, within BWI76_RS27755 at 5759.586 kb on - strand, within BWI76_RS27755 at 5759.592 kb on - strand, within BWI76_RS27755 at 5759.592 kb on - strand at 5759.592 kb on - strand, within BWI76_RS27755 at 5759.592 kb on - strand, within BWI76_RS27755 at 5759.592 kb on - strand, within BWI76_RS27755 at 5759.602 kb on + strand, within BWI76_RS27755 at 5759.602 kb on + strand, within BWI76_RS27755 at 5759.602 kb on + strand, within BWI76_RS27755 at 5759.602 kb on + strand, within BWI76_RS27755 at 5759.610 kb on - strand, within BWI76_RS27755 at 5759.610 kb on - strand, within BWI76_RS27755 at 5759.613 kb on + strand, within BWI76_RS27755 at 5759.621 kb on - strand, within BWI76_RS27755 at 5759.621 kb on - strand, within BWI76_RS27755 at 5759.660 kb on - strand, within BWI76_RS27755 at 5759.668 kb on - strand, within BWI76_RS27755 at 5759.685 kb on - strand, within BWI76_RS27755 at 5759.685 kb on - strand, within BWI76_RS27755 at 5759.690 kb on - strand, within BWI76_RS27755 at 5759.690 kb on - strand, within BWI76_RS27755 at 5759.704 kb on - strand, within BWI76_RS27755 at 5759.761 kb on + strand at 5759.785 kb on + strand at 5759.794 kb on + strand at 5759.794 kb on + strand at 5759.794 kb on + strand at 5759.794 kb on + strand at 5759.794 kb on + strand at 5759.802 kb on - strand at 5759.874 kb on + strand at 5759.882 kb on - strand at 5759.894 kb on + strand at 5759.894 kb on + strand at 5759.894 kb on + strand at 5759.894 kb on + strand at 5759.894 kb on + strand at 5759.896 kb on + strand at 5759.904 kb on + strand at 5759.904 kb on + strand at 5759.930 kb on + strand at 5759.938 kb on - strand at 5759.955 kb on - strand at 5759.962 kb on - strand at 5759.969 kb on - strand at 5759.970 kb on - strand at 5759.976 kb on - strand at 5759.983 kb on - strand at 5759.983 kb on - strand at 5760.270 kb on - strand, within BWI76_RS27760 at 5760.832 kb on + strand, within BWI76_RS27760 at 5760.972 kb on + strand, within BWI76_RS27760 at 5761.393 kb on + strand at 5761.442 kb on - strand at 5761.472 kb on + strand, within BWI76_RS27765 at 5761.473 kb on + strand, within BWI76_RS27765 at 5761.538 kb on - strand, within BWI76_RS27765 at 5761.557 kb on - strand, within BWI76_RS27765 at 5761.711 kb on + strand, within BWI76_RS27765 at 5761.711 kb on + strand, within BWI76_RS27765 at 5761.719 kb on - strand, within BWI76_RS27765 at 5761.719 kb on - strand, within BWI76_RS27765 at 5761.770 kb on - strand, within BWI76_RS27765 at 5761.810 kb on - strand, within BWI76_RS27765 at 5761.882 kb on + strand, within BWI76_RS27765 at 5762.050 kb on - strand, within BWI76_RS27765 at 5762.100 kb on + strand, within BWI76_RS27765 at 5762.171 kb on + strand, within BWI76_RS27765 at 5762.178 kb on - strand, within BWI76_RS27765 at 5762.178 kb on - strand, within BWI76_RS27765 at 5762.184 kb on - strand, within BWI76_RS27765 at 5762.184 kb on - strand, within BWI76_RS27765
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,758,854 - BWI76_RS27750 0.63 +1.8 5,759,017 - BWI76_RS27750 0.75 -0.4 5,759,017 - BWI76_RS27750 0.75 +0.1 5,759,054 - BWI76_RS27750 0.78 -1.3 5,759,069 - BWI76_RS27750 0.79 +0.8 5,759,069 - BWI76_RS27750 0.79 -0.6 5,759,074 + BWI76_RS27750 0.80 -2.5 5,759,082 - BWI76_RS27750 0.80 -2.1 5,759,089 + -1.4 5,759,097 - BWI76_RS27750 0.82 -0.0 5,759,097 - BWI76_RS27750 0.82 -0.3 5,759,121 + BWI76_RS27750 0.83 +0.3 5,759,129 - BWI76_RS27750 0.84 -1.6 5,759,153 - BWI76_RS27750 0.86 +0.3 5,759,209 - +1.6 5,759,234 + -0.6 5,759,234 + +1.0 5,759,234 + -0.2 5,759,239 + +2.7 5,759,242 - +1.3 5,759,242 - +0.3 5,759,242 - +0.8 5,759,262 + -0.6 5,759,262 + -1.8 5,759,262 + -1.8 5,759,262 + +1.4 5,759,262 + -1.4 5,759,262 + -3.4 5,759,262 + -1.1 5,759,262 + +2.8 5,759,262 + +1.2 5,759,262 + -2.4 5,759,262 + +1.0 5,759,262 - -0.8 5,759,267 + -0.0 5,759,270 - +0.9 5,759,270 - -3.3 5,759,270 - -0.5 5,759,270 - -2.0 5,759,270 - -0.8 5,759,270 - -4.0 5,759,270 - +1.0 5,759,312 + -0.0 5,759,318 - -0.0 5,759,320 - -1.8 5,759,320 - +0.0 5,759,330 - -1.0 5,759,342 - +1.0 5,759,342 - -2.0 5,759,435 + -0.8 5,759,435 + -0.4 5,759,443 - -1.0 5,759,443 - +0.9 5,759,489 + BWI76_RS27755 0.13 -2.6 5,759,494 + BWI76_RS27755 0.15 -1.8 5,759,503 + BWI76_RS27755 0.18 -1.6 5,759,513 + BWI76_RS27755 0.21 +1.0 5,759,513 + BWI76_RS27755 0.21 -0.3 5,759,513 + BWI76_RS27755 0.21 -1.6 5,759,513 - BWI76_RS27755 0.21 -0.0 5,759,521 - BWI76_RS27755 0.24 -0.0 5,759,521 - BWI76_RS27755 0.24 +1.0 5,759,521 - BWI76_RS27755 0.24 -0.0 5,759,526 + BWI76_RS27755 0.25 -1.8 5,759,526 + BWI76_RS27755 0.25 -1.0 5,759,526 + BWI76_RS27755 0.25 +1.0 5,759,526 + BWI76_RS27755 0.25 +0.8 5,759,526 + BWI76_RS27755 0.25 -2.8 5,759,531 - BWI76_RS27755 0.27 -2.4 5,759,534 - BWI76_RS27755 0.28 -1.8 5,759,534 - BWI76_RS27755 0.28 -0.6 5,759,534 - BWI76_RS27755 0.28 -1.4 5,759,534 - BWI76_RS27755 0.28 -3.1 5,759,541 + BWI76_RS27755 0.30 -2.0 5,759,549 - BWI76_RS27755 0.33 -0.4 5,759,561 + BWI76_RS27755 0.37 +4.2 5,759,584 + BWI76_RS27755 0.45 -0.0 5,759,584 + BWI76_RS27755 0.45 +1.0 5,759,585 - BWI76_RS27755 0.45 +1.0 5,759,586 - BWI76_RS27755 0.45 -1.8 5,759,592 - BWI76_RS27755 0.47 -3.4 5,759,592 - +1.0 5,759,592 - BWI76_RS27755 0.47 -2.5 5,759,592 - BWI76_RS27755 0.47 +1.0 5,759,592 - BWI76_RS27755 0.47 -3.6 5,759,602 + BWI76_RS27755 0.50 +0.3 5,759,602 + BWI76_RS27755 0.50 -3.7 5,759,602 + BWI76_RS27755 0.50 +1.0 5,759,602 + BWI76_RS27755 0.50 +1.3 5,759,610 - BWI76_RS27755 0.53 +0.0 5,759,610 - BWI76_RS27755 0.53 -1.8 5,759,613 + BWI76_RS27755 0.54 +1.7 5,759,621 - BWI76_RS27755 0.57 -0.6 5,759,621 - BWI76_RS27755 0.57 -1.6 5,759,660 - BWI76_RS27755 0.70 +1.0 5,759,668 - BWI76_RS27755 0.72 -0.6 5,759,685 - BWI76_RS27755 0.78 -0.6 5,759,685 - BWI76_RS27755 0.78 +0.1 5,759,690 - BWI76_RS27755 0.80 -1.2 5,759,690 - BWI76_RS27755 0.80 -0.9 5,759,704 - BWI76_RS27755 0.84 +1.6 5,759,761 + +1.7 5,759,785 + +1.0 5,759,794 + -0.0 5,759,794 + -1.6 5,759,794 + -1.6 5,759,794 + +0.9 5,759,794 + -0.4 5,759,802 - +0.2 5,759,874 + +1.1 5,759,882 - +0.6 5,759,894 + -0.1 5,759,894 + -0.3 5,759,894 + +0.1 5,759,894 + -2.4 5,759,894 + -0.6 5,759,896 + +0.1 5,759,904 + +2.3 5,759,904 + +0.3 5,759,930 + -0.0 5,759,938 - -0.1 5,759,955 - +1.1 5,759,962 - +2.1 5,759,969 - +0.0 5,759,970 - +1.2 5,759,976 - -1.4 5,759,983 - +2.5 5,759,983 - +1.0 5,760,270 - BWI76_RS27760 0.30 -1.0 5,760,832 + BWI76_RS27760 0.71 -0.6 5,760,972 + BWI76_RS27760 0.81 -1.7 5,761,393 + -2.5 5,761,442 - +0.5 5,761,472 + BWI76_RS27765 0.10 -0.6 5,761,473 + BWI76_RS27765 0.10 +0.6 5,761,538 - BWI76_RS27765 0.16 -3.0 5,761,557 - BWI76_RS27765 0.17 +0.5 5,761,711 + BWI76_RS27765 0.30 -2.0 5,761,711 + BWI76_RS27765 0.30 -1.4 5,761,719 - BWI76_RS27765 0.31 +1.1 5,761,719 - BWI76_RS27765 0.31 -0.6 5,761,770 - BWI76_RS27765 0.35 -0.0 5,761,810 - BWI76_RS27765 0.39 -2.1 5,761,882 + BWI76_RS27765 0.45 -1.0 5,762,050 - BWI76_RS27765 0.59 +0.4 5,762,100 + BWI76_RS27765 0.63 -0.2 5,762,171 + BWI76_RS27765 0.69 -0.6 5,762,178 - BWI76_RS27765 0.70 -1.4 5,762,178 - BWI76_RS27765 0.70 -1.1 5,762,184 - BWI76_RS27765 0.70 +0.7 5,762,184 - BWI76_RS27765 0.70 +0.9
Or see this region's nucleotide sequence