Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27095 and BWI76_RS27100 are separated by 77 nucleotides BWI76_RS27100 and BWI76_RS27105 overlap by 4 nucleotides BWI76_RS27105 and BWI76_RS27110 overlap by 8 nucleotides
BWI76_RS27095: BWI76_RS27095 - MFS transporter, at 5,622,139 to 5,623,458
_RS27095
BWI76_RS27100: BWI76_RS27100 - carbohydrate kinase, at 5,623,536 to 5,625,041
_RS27100
BWI76_RS27105: BWI76_RS27105 - 3-keto-L-gulonate-6-phosphate decarboxylase, at 5,625,038 to 5,625,700
_RS27105
BWI76_RS27110: BWI76_RS27110 - xylulose 5-phosphate 3-epimerase, at 5,625,693 to 5,626,553
_RS27110
Position (kb) 5623
5624
5625
5626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5622.664 kb on - strand, within BWI76_RS27095 at 5622.711 kb on + strand, within BWI76_RS27095 at 5622.711 kb on + strand, within BWI76_RS27095 at 5622.729 kb on - strand at 5622.785 kb on - strand, within BWI76_RS27095 at 5622.890 kb on + strand, within BWI76_RS27095 at 5622.922 kb on - strand, within BWI76_RS27095 at 5622.953 kb on + strand, within BWI76_RS27095 at 5622.963 kb on - strand, within BWI76_RS27095 at 5622.972 kb on + strand, within BWI76_RS27095 at 5623.044 kb on - strand, within BWI76_RS27095 at 5623.063 kb on + strand, within BWI76_RS27095 at 5623.071 kb on - strand, within BWI76_RS27095 at 5623.140 kb on + strand, within BWI76_RS27095 at 5623.140 kb on + strand, within BWI76_RS27095 at 5623.140 kb on + strand, within BWI76_RS27095 at 5623.148 kb on - strand, within BWI76_RS27095 at 5623.194 kb on + strand, within BWI76_RS27095 at 5623.289 kb on + strand, within BWI76_RS27095 at 5623.453 kb on + strand at 5623.453 kb on + strand at 5623.623 kb on - strand at 5623.635 kb on - strand at 5623.675 kb on - strand at 5623.751 kb on - strand, within BWI76_RS27100 at 5623.760 kb on + strand, within BWI76_RS27100 at 5623.760 kb on + strand, within BWI76_RS27100 at 5623.760 kb on + strand, within BWI76_RS27100 at 5623.777 kb on + strand, within BWI76_RS27100 at 5623.787 kb on + strand, within BWI76_RS27100 at 5623.795 kb on - strand, within BWI76_RS27100 at 5623.795 kb on - strand, within BWI76_RS27100 at 5623.795 kb on - strand, within BWI76_RS27100 at 5623.795 kb on - strand, within BWI76_RS27100 at 5623.829 kb on + strand at 5623.829 kb on + strand, within BWI76_RS27100 at 5623.837 kb on - strand, within BWI76_RS27100 at 5623.837 kb on - strand, within BWI76_RS27100 at 5623.839 kb on + strand, within BWI76_RS27100 at 5623.842 kb on - strand, within BWI76_RS27100 at 5623.907 kb on + strand, within BWI76_RS27100 at 5623.907 kb on + strand, within BWI76_RS27100 at 5623.907 kb on + strand, within BWI76_RS27100 at 5623.974 kb on - strand, within BWI76_RS27100 at 5624.175 kb on + strand, within BWI76_RS27100 at 5624.183 kb on - strand, within BWI76_RS27100 at 5624.241 kb on - strand, within BWI76_RS27100 at 5624.281 kb on + strand, within BWI76_RS27100 at 5624.377 kb on + strand, within BWI76_RS27100 at 5624.390 kb on + strand, within BWI76_RS27100 at 5624.398 kb on - strand, within BWI76_RS27100 at 5624.405 kb on - strand, within BWI76_RS27100 at 5624.474 kb on + strand, within BWI76_RS27100 at 5624.603 kb on - strand, within BWI76_RS27100 at 5624.609 kb on - strand, within BWI76_RS27100 at 5624.872 kb on + strand, within BWI76_RS27100 at 5624.879 kb on - strand, within BWI76_RS27100 at 5624.944 kb on + strand at 5625.000 kb on + strand at 5625.000 kb on + strand at 5625.013 kb on - strand at 5625.019 kb on + strand at 5625.079 kb on + strand at 5625.099 kb on + strand at 5625.349 kb on - strand, within BWI76_RS27105 at 5625.416 kb on - strand, within BWI76_RS27105 at 5625.458 kb on + strand, within BWI76_RS27105 at 5625.475 kb on + strand, within BWI76_RS27105 at 5625.525 kb on + strand, within BWI76_RS27105 at 5625.549 kb on + strand, within BWI76_RS27105 at 5625.557 kb on - strand, within BWI76_RS27105 at 5625.582 kb on - strand, within BWI76_RS27105 at 5625.590 kb on + strand, within BWI76_RS27105 at 5625.619 kb on + strand, within BWI76_RS27105 at 5625.743 kb on + strand at 5625.756 kb on - strand at 5625.852 kb on - strand, within BWI76_RS27110 at 5625.869 kb on - strand, within BWI76_RS27110 at 5625.947 kb on + strand, within BWI76_RS27110 at 5625.991 kb on - strand, within BWI76_RS27110
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,622,664 - BWI76_RS27095 0.40 +1.7 5,622,711 + BWI76_RS27095 0.43 -0.7 5,622,711 + BWI76_RS27095 0.43 -0.3 5,622,729 - +1.0 5,622,785 - BWI76_RS27095 0.49 -2.4 5,622,890 + BWI76_RS27095 0.57 -1.4 5,622,922 - BWI76_RS27095 0.59 -2.1 5,622,953 + BWI76_RS27095 0.62 -1.6 5,622,963 - BWI76_RS27095 0.62 +0.4 5,622,972 + BWI76_RS27095 0.63 +0.4 5,623,044 - BWI76_RS27095 0.69 +1.3 5,623,063 + BWI76_RS27095 0.70 -0.2 5,623,071 - BWI76_RS27095 0.71 +1.5 5,623,140 + BWI76_RS27095 0.76 +2.6 5,623,140 + BWI76_RS27095 0.76 +0.7 5,623,140 + BWI76_RS27095 0.76 +0.6 5,623,148 - BWI76_RS27095 0.76 +0.7 5,623,194 + BWI76_RS27095 0.80 -0.7 5,623,289 + BWI76_RS27095 0.87 +0.4 5,623,453 + +0.7 5,623,453 + -2.1 5,623,623 - -0.5 5,623,635 - -0.3 5,623,675 - +2.0 5,623,751 - BWI76_RS27100 0.14 -0.3 5,623,760 + BWI76_RS27100 0.15 -0.8 5,623,760 + BWI76_RS27100 0.15 +1.6 5,623,760 + BWI76_RS27100 0.15 -1.7 5,623,777 + BWI76_RS27100 0.16 +0.1 5,623,787 + BWI76_RS27100 0.17 -0.1 5,623,795 - BWI76_RS27100 0.17 -0.2 5,623,795 - BWI76_RS27100 0.17 +0.4 5,623,795 - BWI76_RS27100 0.17 -2.2 5,623,795 - BWI76_RS27100 0.17 -1.7 5,623,829 + -1.8 5,623,829 + BWI76_RS27100 0.19 +0.3 5,623,837 - BWI76_RS27100 0.20 -0.6 5,623,837 - BWI76_RS27100 0.20 -1.6 5,623,839 + BWI76_RS27100 0.20 -1.1 5,623,842 - BWI76_RS27100 0.20 +1.3 5,623,907 + BWI76_RS27100 0.25 -0.1 5,623,907 + BWI76_RS27100 0.25 +1.1 5,623,907 + BWI76_RS27100 0.25 +0.3 5,623,974 - BWI76_RS27100 0.29 -0.6 5,624,175 + BWI76_RS27100 0.42 +1.4 5,624,183 - BWI76_RS27100 0.43 +0.6 5,624,241 - BWI76_RS27100 0.47 +0.3 5,624,281 + BWI76_RS27100 0.49 -1.0 5,624,377 + BWI76_RS27100 0.56 +0.8 5,624,390 + BWI76_RS27100 0.57 -0.5 5,624,398 - BWI76_RS27100 0.57 +0.3 5,624,405 - BWI76_RS27100 0.58 +0.5 5,624,474 + BWI76_RS27100 0.62 +0.1 5,624,603 - BWI76_RS27100 0.71 -3.5 5,624,609 - BWI76_RS27100 0.71 +1.1 5,624,872 + BWI76_RS27100 0.89 +0.1 5,624,879 - BWI76_RS27100 0.89 -2.6 5,624,944 + +1.4 5,625,000 + +1.1 5,625,000 + +0.5 5,625,013 - -0.6 5,625,019 + +0.0 5,625,079 + +1.4 5,625,099 + -2.2 5,625,349 - BWI76_RS27105 0.47 +1.1 5,625,416 - BWI76_RS27105 0.57 +0.3 5,625,458 + BWI76_RS27105 0.63 +0.3 5,625,475 + BWI76_RS27105 0.66 +0.7 5,625,525 + BWI76_RS27105 0.73 -1.0 5,625,549 + BWI76_RS27105 0.77 +0.7 5,625,557 - BWI76_RS27105 0.78 +0.3 5,625,582 - BWI76_RS27105 0.82 +2.3 5,625,590 + BWI76_RS27105 0.83 +0.1 5,625,619 + BWI76_RS27105 0.88 -0.0 5,625,743 + +0.1 5,625,756 - -1.4 5,625,852 - BWI76_RS27110 0.18 +0.5 5,625,869 - BWI76_RS27110 0.20 -2.0 5,625,947 + BWI76_RS27110 0.30 -1.4 5,625,991 - BWI76_RS27110 0.35 +1.1
Or see this region's nucleotide sequence