Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26730 and BWI76_RS26735 are separated by 271 nucleotides BWI76_RS26735 and BWI76_RS26740 are separated by 49 nucleotides
BWI76_RS26730: BWI76_RS26730 - inner membrane protein YhjD, at 5,534,723 to 5,535,754
_RS26730
BWI76_RS26735: BWI76_RS26735 - MFS transporter, at 5,536,026 to 5,537,348
_RS26735
BWI76_RS26740: BWI76_RS26740 - AsmA family protein, at 5,537,398 to 5,539,449
_RS26740
Position (kb) 5536
5537
5538 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.247 kb on - strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.336 kb on - strand, within BWI76_RS26730 at 5535.388 kb on + strand, within BWI76_RS26730 at 5535.412 kb on + strand, within BWI76_RS26730 at 5535.536 kb on + strand, within BWI76_RS26730 at 5535.635 kb on + strand, within BWI76_RS26730 at 5535.672 kb on + strand at 5535.682 kb on + strand at 5535.682 kb on + strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.743 kb on + strand at 5535.744 kb on - strand at 5535.840 kb on + strand at 5535.847 kb on - strand at 5535.980 kb on + strand at 5536.029 kb on - strand at 5536.068 kb on + strand at 5536.109 kb on + strand at 5536.117 kb on - strand at 5536.256 kb on + strand, within BWI76_RS26735 at 5536.406 kb on + strand, within BWI76_RS26735 at 5536.668 kb on - strand, within BWI76_RS26735 at 5536.727 kb on + strand, within BWI76_RS26735 at 5536.789 kb on + strand, within BWI76_RS26735 at 5536.822 kb on - strand, within BWI76_RS26735 at 5536.822 kb on - strand, within BWI76_RS26735 at 5536.984 kb on + strand, within BWI76_RS26735 at 5536.996 kb on + strand, within BWI76_RS26735 at 5537.000 kb on - strand, within BWI76_RS26735 at 5537.004 kb on - strand, within BWI76_RS26735 at 5537.014 kb on + strand, within BWI76_RS26735 at 5537.097 kb on - strand at 5537.277 kb on - strand at 5537.350 kb on - strand at 5537.452 kb on - strand at 5537.461 kb on - strand at 5537.510 kb on - strand at 5537.615 kb on + strand, within BWI76_RS26740 at 5537.904 kb on - strand, within BWI76_RS26740 at 5537.934 kb on + strand, within BWI76_RS26740 at 5538.058 kb on + strand, within BWI76_RS26740 at 5538.122 kb on + strand, within BWI76_RS26740 at 5538.156 kb on - strand at 5538.179 kb on - strand, within BWI76_RS26740 at 5538.293 kb on + strand, within BWI76_RS26740 at 5538.293 kb on + strand, within BWI76_RS26740
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,535,139 + BWI76_RS26730 0.40 -3.0 5,535,139 + BWI76_RS26730 0.40 -0.9 5,535,247 - BWI76_RS26730 0.51 -1.8 5,535,328 + BWI76_RS26730 0.59 -2.4 5,535,328 + BWI76_RS26730 0.59 +1.0 5,535,336 - BWI76_RS26730 0.59 -0.7 5,535,388 + BWI76_RS26730 0.64 -5.0 5,535,412 + BWI76_RS26730 0.67 +1.0 5,535,536 + BWI76_RS26730 0.79 -3.2 5,535,635 + BWI76_RS26730 0.88 -1.8 5,535,672 + +0.7 5,535,682 + -2.0 5,535,682 + -2.3 5,535,690 - -2.1 5,535,690 - -0.5 5,535,690 - -0.0 5,535,690 - -1.3 5,535,690 - +0.8 5,535,690 - -3.2 5,535,690 - +1.0 5,535,690 - +0.7 5,535,743 + -1.8 5,535,744 - -1.6 5,535,840 + -0.0 5,535,847 - +0.1 5,535,980 + -0.2 5,536,029 - +1.0 5,536,068 + +1.5 5,536,109 + -1.3 5,536,117 - -1.7 5,536,256 + BWI76_RS26735 0.17 -0.2 5,536,406 + BWI76_RS26735 0.29 +0.8 5,536,668 - BWI76_RS26735 0.49 -0.4 5,536,727 + BWI76_RS26735 0.53 +0.7 5,536,789 + BWI76_RS26735 0.58 -2.2 5,536,822 - BWI76_RS26735 0.60 -0.7 5,536,822 - BWI76_RS26735 0.60 -1.9 5,536,984 + BWI76_RS26735 0.72 -1.6 5,536,996 + BWI76_RS26735 0.73 -0.7 5,537,000 - BWI76_RS26735 0.74 -1.6 5,537,004 - BWI76_RS26735 0.74 -0.1 5,537,014 + BWI76_RS26735 0.75 +0.2 5,537,097 - +3.0 5,537,277 - +0.6 5,537,350 - +1.5 5,537,452 - -0.6 5,537,461 - +0.7 5,537,510 - -0.8 5,537,615 + BWI76_RS26740 0.11 -0.4 5,537,904 - BWI76_RS26740 0.25 -0.3 5,537,934 + BWI76_RS26740 0.26 +0.8 5,538,058 + BWI76_RS26740 0.32 +0.5 5,538,122 + BWI76_RS26740 0.35 +0.6 5,538,156 - +1.0 5,538,179 - BWI76_RS26740 0.38 -1.2 5,538,293 + BWI76_RS26740 0.44 -1.3 5,538,293 + BWI76_RS26740 0.44 -0.6
Or see this region's nucleotide sequence