Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26330

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26325 and BWI76_RS26330 are separated by 44 nucleotidesBWI76_RS26330 and BWI76_RS26335 are separated by 13 nucleotidesBWI76_RS26335 and BWI76_RS26340 overlap by 4 nucleotides BWI76_RS26325: BWI76_RS26325 - altronate hydrolase, at 5,448,974 to 5,450,569 _RS26325 BWI76_RS26330: BWI76_RS26330 - ABC transporter ATP-binding protein, at 5,450,614 to 5,451,315 _RS26330 BWI76_RS26335: BWI76_RS26335 - ABC transporter ATP-binding protein, at 5,451,329 to 5,452,096 _RS26335 BWI76_RS26340: BWI76_RS26340 - branched-chain amino acid ABC transporter permease, at 5,452,093 to 5,453,373 _RS26340 Position (kb) 5450 5451 5452Strain fitness (log2 ratio) -2 -1 0 1at 5449.788 kb on + strand, within BWI76_RS26325at 5449.881 kb on + strand, within BWI76_RS26325at 5450.195 kb on + strand, within BWI76_RS26325at 5450.300 kb on + strand, within BWI76_RS26325at 5450.506 kb on + strandat 5450.528 kb on - strandat 5450.839 kb on - strand, within BWI76_RS26330at 5450.951 kb on + strand, within BWI76_RS26330at 5451.036 kb on - strand, within BWI76_RS26330at 5451.133 kb on + strand, within BWI76_RS26330at 5451.230 kb on + strand, within BWI76_RS26330at 5451.290 kb on + strandat 5451.407 kb on + strand, within BWI76_RS26335at 5451.472 kb on + strand, within BWI76_RS26335at 5451.591 kb on + strand, within BWI76_RS26335at 5451.738 kb on - strand, within BWI76_RS26335at 5452.303 kb on - strand, within BWI76_RS26340at 5452.311 kb on - strand, within BWI76_RS26340

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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5,449,788 + BWI76_RS26325 0.51 -0.5
5,449,881 + BWI76_RS26325 0.57 +0.9
5,450,195 + BWI76_RS26325 0.77 +0.9
5,450,300 + BWI76_RS26325 0.83 +0.3
5,450,506 + -0.4
5,450,528 - -0.8
5,450,839 - BWI76_RS26330 0.32 -0.7
5,450,951 + BWI76_RS26330 0.48 -1.1
5,451,036 - BWI76_RS26330 0.60 +0.9
5,451,133 + BWI76_RS26330 0.74 +0.0
5,451,230 + BWI76_RS26330 0.88 -2.5
5,451,290 + -1.0
5,451,407 + BWI76_RS26335 0.10 -0.6
5,451,472 + BWI76_RS26335 0.19 -0.6
5,451,591 + BWI76_RS26335 0.34 -0.3
5,451,738 - BWI76_RS26335 0.53 +0.1
5,452,303 - BWI76_RS26340 0.16 -0.1
5,452,311 - BWI76_RS26340 0.17 -0.8

Or see this region's nucleotide sequence