Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26320 and BWI76_RS26325 are separated by 33 nucleotides BWI76_RS26325 and BWI76_RS26330 are separated by 44 nucleotides BWI76_RS26330 and BWI76_RS26335 are separated by 13 nucleotides
BWI76_RS26320: BWI76_RS26320 - MFS transporter, at 5,447,630 to 5,448,940
_RS26320
BWI76_RS26325: BWI76_RS26325 - altronate hydrolase, at 5,448,974 to 5,450,569
_RS26325
BWI76_RS26330: BWI76_RS26330 - ABC transporter ATP-binding protein, at 5,450,614 to 5,451,315
_RS26330
BWI76_RS26335: BWI76_RS26335 - ABC transporter ATP-binding protein, at 5,451,329 to 5,452,096
_RS26335
Position (kb) 5448
5449
5450
5451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5448.098 kb on - strand, within BWI76_RS26320 at 5448.098 kb on - strand, within BWI76_RS26320 at 5448.337 kb on + strand, within BWI76_RS26320 at 5448.345 kb on - strand, within BWI76_RS26320 at 5448.382 kb on + strand, within BWI76_RS26320 at 5448.395 kb on + strand, within BWI76_RS26320 at 5448.395 kb on + strand, within BWI76_RS26320 at 5448.468 kb on + strand, within BWI76_RS26320 at 5448.702 kb on - strand, within BWI76_RS26320 at 5448.726 kb on + strand, within BWI76_RS26320 at 5448.817 kb on - strand at 5448.941 kb on + strand at 5448.949 kb on - strand at 5448.949 kb on - strand at 5449.272 kb on + strand, within BWI76_RS26325 at 5449.295 kb on - strand, within BWI76_RS26325 at 5449.426 kb on + strand, within BWI76_RS26325 at 5449.507 kb on - strand, within BWI76_RS26325 at 5449.573 kb on - strand, within BWI76_RS26325 at 5449.573 kb on - strand, within BWI76_RS26325 at 5449.575 kb on + strand, within BWI76_RS26325 at 5449.583 kb on - strand, within BWI76_RS26325 at 5449.788 kb on + strand, within BWI76_RS26325 at 5449.881 kb on + strand, within BWI76_RS26325 at 5450.195 kb on + strand, within BWI76_RS26325 at 5450.300 kb on + strand, within BWI76_RS26325 at 5450.506 kb on + strand at 5450.528 kb on - strand at 5450.839 kb on - strand, within BWI76_RS26330 at 5450.951 kb on + strand, within BWI76_RS26330 at 5451.036 kb on - strand, within BWI76_RS26330 at 5451.133 kb on + strand, within BWI76_RS26330 at 5451.230 kb on + strand, within BWI76_RS26330 at 5451.290 kb on + strand at 5451.407 kb on + strand, within BWI76_RS26335 at 5451.472 kb on + strand, within BWI76_RS26335
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,448,098 - BWI76_RS26320 0.36 +0.4 5,448,098 - BWI76_RS26320 0.36 -1.1 5,448,337 + BWI76_RS26320 0.54 +0.5 5,448,345 - BWI76_RS26320 0.55 +0.2 5,448,382 + BWI76_RS26320 0.57 +2.3 5,448,395 + BWI76_RS26320 0.58 +0.2 5,448,395 + BWI76_RS26320 0.58 -0.1 5,448,468 + BWI76_RS26320 0.64 -0.2 5,448,702 - BWI76_RS26320 0.82 +0.3 5,448,726 + BWI76_RS26320 0.84 -2.4 5,448,817 - +0.2 5,448,941 + +0.4 5,448,949 - +0.4 5,448,949 - +0.9 5,449,272 + BWI76_RS26325 0.19 -1.9 5,449,295 - BWI76_RS26325 0.20 -1.1 5,449,426 + BWI76_RS26325 0.28 +0.0 5,449,507 - BWI76_RS26325 0.33 -1.4 5,449,573 - BWI76_RS26325 0.38 -0.6 5,449,573 - BWI76_RS26325 0.38 -3.6 5,449,575 + BWI76_RS26325 0.38 -1.2 5,449,583 - BWI76_RS26325 0.38 -2.8 5,449,788 + BWI76_RS26325 0.51 -0.5 5,449,881 + BWI76_RS26325 0.57 +0.9 5,450,195 + BWI76_RS26325 0.77 +0.9 5,450,300 + BWI76_RS26325 0.83 +0.3 5,450,506 + -0.4 5,450,528 - -0.8 5,450,839 - BWI76_RS26330 0.32 -0.7 5,450,951 + BWI76_RS26330 0.48 -1.1 5,451,036 - BWI76_RS26330 0.60 +0.9 5,451,133 + BWI76_RS26330 0.74 +0.0 5,451,230 + BWI76_RS26330 0.88 -2.5 5,451,290 + -1.0 5,451,407 + BWI76_RS26335 0.10 -0.6 5,451,472 + BWI76_RS26335 0.19 -0.6
Or see this region's nucleotide sequence