Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26205 and BWI76_RS26210 are separated by 80 nucleotides BWI76_RS26210 and BWI76_RS26215 overlap by 4 nucleotides
BWI76_RS26205: BWI76_RS26205 - glucose-1-phosphate adenylyltransferase, at 5,420,888 to 5,422,183
_RS26205
BWI76_RS26210: BWI76_RS26210 - glycogen debranching enzyme, at 5,422,264 to 5,424,240
_RS26210
BWI76_RS26215: BWI76_RS26215 - glycogen-branching enzyme, at 5,424,237 to 5,426,423
_RS26215
Position (kb) 5422
5423
5424
5425 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5421.506 kb on - strand, within BWI76_RS26205 at 5421.640 kb on + strand, within BWI76_RS26205 at 5421.648 kb on - strand, within BWI76_RS26205 at 5421.946 kb on + strand, within BWI76_RS26205 at 5422.013 kb on + strand, within BWI76_RS26205 at 5422.099 kb on - strand at 5422.263 kb on - strand at 5422.333 kb on - strand at 5422.360 kb on + strand at 5422.373 kb on + strand at 5422.381 kb on - strand at 5422.462 kb on - strand, within BWI76_RS26210 at 5422.483 kb on + strand, within BWI76_RS26210 at 5422.516 kb on + strand, within BWI76_RS26210 at 5422.864 kb on - strand, within BWI76_RS26210 at 5422.910 kb on - strand, within BWI76_RS26210 at 5422.985 kb on + strand, within BWI76_RS26210 at 5423.454 kb on - strand, within BWI76_RS26210 at 5423.763 kb on - strand, within BWI76_RS26210 at 5423.770 kb on - strand, within BWI76_RS26210 at 5423.802 kb on - strand, within BWI76_RS26210 at 5423.915 kb on + strand, within BWI76_RS26210 at 5423.978 kb on - strand, within BWI76_RS26210 at 5424.138 kb on + strand at 5424.183 kb on - strand at 5424.345 kb on - strand at 5424.504 kb on + strand, within BWI76_RS26215 at 5424.604 kb on - strand, within BWI76_RS26215 at 5424.652 kb on + strand, within BWI76_RS26215 at 5424.675 kb on + strand, within BWI76_RS26215 at 5424.786 kb on + strand, within BWI76_RS26215
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,421,506 - BWI76_RS26205 0.48 +0.9 5,421,640 + BWI76_RS26205 0.58 -4.0 5,421,648 - BWI76_RS26205 0.59 +1.1 5,421,946 + BWI76_RS26205 0.82 +2.7 5,422,013 + BWI76_RS26205 0.87 +1.5 5,422,099 - -0.4 5,422,263 - -2.4 5,422,333 - -0.5 5,422,360 + +0.2 5,422,373 + -1.5 5,422,381 - +1.0 5,422,462 - BWI76_RS26210 0.10 +1.0 5,422,483 + BWI76_RS26210 0.11 -2.2 5,422,516 + BWI76_RS26210 0.13 +1.3 5,422,864 - BWI76_RS26210 0.30 -0.0 5,422,910 - BWI76_RS26210 0.33 -1.2 5,422,985 + BWI76_RS26210 0.36 -0.3 5,423,454 - BWI76_RS26210 0.60 +1.6 5,423,763 - BWI76_RS26210 0.76 -1.5 5,423,770 - BWI76_RS26210 0.76 -1.4 5,423,802 - BWI76_RS26210 0.78 -0.5 5,423,915 + BWI76_RS26210 0.84 +1.3 5,423,978 - BWI76_RS26210 0.87 -2.0 5,424,138 + -0.0 5,424,183 - -0.1 5,424,345 - +1.3 5,424,504 + BWI76_RS26215 0.12 -0.9 5,424,604 - BWI76_RS26215 0.17 +1.7 5,424,652 + BWI76_RS26215 0.19 +0.2 5,424,675 + BWI76_RS26215 0.20 +1.4 5,424,786 + BWI76_RS26215 0.25 -1.8
Or see this region's nucleotide sequence