Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25280 and BWI76_RS25285 overlap by 4 nucleotides BWI76_RS25285 and BWI76_RS25290 are separated by 53 nucleotides BWI76_RS25290 and BWI76_RS25295 overlap by 4 nucleotides BWI76_RS25295 and BWI76_RS25300 are separated by 234 nucleotides
BWI76_RS25280: BWI76_RS25280 - RNase adaptor protein RapZ, at 5,254,190 to 5,255,044
_RS25280
BWI76_RS25285: BWI76_RS25285 - HPr family phosphocarrier protein, at 5,255,041 to 5,255,313
_RS25285
BWI76_RS25290: BWI76_RS25290 - monofunctional biosynthetic peptidoglycan transglycosylase, at 5,255,367 to 5,256,092
_RS25290
BWI76_RS25295: BWI76_RS25295 - glutamine amidotransferase, at 5,256,089 to 5,256,742
_RS25295
BWI76_RS25300: BWI76_RS25300 - hybrid sensor histidine kinase/response regulator, at 5,256,977 to 5,259,316
_RS25300
Position (kb) 5255
5256
5257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5254.555 kb on + strand, within BWI76_RS25280 at 5255.053 kb on - strand at 5255.069 kb on + strand, within BWI76_RS25285 at 5255.356 kb on - strand at 5255.396 kb on - strand at 5255.680 kb on - strand, within BWI76_RS25290 at 5255.899 kb on - strand, within BWI76_RS25290 at 5255.989 kb on + strand, within BWI76_RS25290 at 5255.989 kb on + strand, within BWI76_RS25290 at 5255.994 kb on + strand, within BWI76_RS25290 at 5255.997 kb on - strand, within BWI76_RS25290 at 5256.013 kb on + strand, within BWI76_RS25290 at 5256.021 kb on - strand at 5256.347 kb on + strand, within BWI76_RS25295 at 5256.468 kb on + strand, within BWI76_RS25295 at 5256.521 kb on - strand, within BWI76_RS25295 at 5256.556 kb on + strand, within BWI76_RS25295 at 5256.724 kb on - strand at 5256.729 kb on - strand at 5256.745 kb on + strand at 5256.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,254,555 + BWI76_RS25280 0.43 -1.3 5,255,053 - -1.3 5,255,069 + BWI76_RS25285 0.10 -0.3 5,255,356 - +3.3 5,255,396 - -0.2 5,255,680 - BWI76_RS25290 0.43 +0.3 5,255,899 - BWI76_RS25290 0.73 -2.8 5,255,989 + BWI76_RS25290 0.86 -2.6 5,255,989 + BWI76_RS25290 0.86 -0.6 5,255,994 + BWI76_RS25290 0.86 -0.8 5,255,997 - BWI76_RS25290 0.87 +0.7 5,256,013 + BWI76_RS25290 0.89 -1.1 5,256,021 - +1.9 5,256,347 + BWI76_RS25295 0.39 -0.5 5,256,468 + BWI76_RS25295 0.58 -0.6 5,256,521 - BWI76_RS25295 0.66 +0.3 5,256,556 + BWI76_RS25295 0.71 +0.2 5,256,724 - +1.2 5,256,729 - +0.4 5,256,745 + +1.3 5,256,960 + +0.2
Or see this region's nucleotide sequence