Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24645 and BWI76_RS24650 are separated by 1 nucleotides BWI76_RS24650 and BWI76_RS24655 are separated by 0 nucleotides BWI76_RS24655 and BWI76_RS24660 overlap by 4 nucleotides
BWI76_RS24645: BWI76_RS24645 - autoinducer 2 ABC transporter substrate-binding protein, at 5,135,999 to 5,137,000
_RS24645
BWI76_RS24650: BWI76_RS24650 - putative transport system permease component, at 5,137,002 to 5,137,994
_RS24650
BWI76_RS24655: BWI76_RS24655 - autoinducer 2 ABC transporter permease LsrC, at 5,137,995 to 5,139,029
_RS24655
BWI76_RS24660: BWI76_RS24660 - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 5,139,026 to 5,140,513
_RS24660
Position (kb) 5137
5138
5139
5140 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5137.044 kb on + strand at 5137.105 kb on + strand, within BWI76_RS24650 at 5137.371 kb on - strand, within BWI76_RS24650 at 5137.549 kb on - strand, within BWI76_RS24650 at 5137.585 kb on + strand, within BWI76_RS24650 at 5137.687 kb on + strand, within BWI76_RS24650 at 5137.970 kb on - strand at 5137.970 kb on - strand at 5138.211 kb on - strand, within BWI76_RS24655 at 5138.512 kb on - strand, within BWI76_RS24655 at 5138.512 kb on - strand, within BWI76_RS24655 at 5138.593 kb on - strand, within BWI76_RS24655 at 5138.593 kb on - strand, within BWI76_RS24655 at 5138.634 kb on - strand, within BWI76_RS24655 at 5138.662 kb on - strand, within BWI76_RS24655 at 5138.771 kb on + strand, within BWI76_RS24655 at 5139.264 kb on - strand, within BWI76_RS24660 at 5139.284 kb on - strand, within BWI76_RS24660 at 5139.517 kb on + strand, within BWI76_RS24660 at 5139.583 kb on - strand, within BWI76_RS24660
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,137,044 + +0.7 5,137,105 + BWI76_RS24650 0.10 +1.3 5,137,371 - BWI76_RS24650 0.37 -0.0 5,137,549 - BWI76_RS24650 0.55 +0.4 5,137,585 + BWI76_RS24650 0.59 -0.1 5,137,687 + BWI76_RS24650 0.69 -1.3 5,137,970 - -0.5 5,137,970 - -0.1 5,138,211 - BWI76_RS24655 0.21 +1.9 5,138,512 - BWI76_RS24655 0.50 +1.1 5,138,512 - BWI76_RS24655 0.50 +1.7 5,138,593 - BWI76_RS24655 0.58 +0.7 5,138,593 - BWI76_RS24655 0.58 +0.3 5,138,634 - BWI76_RS24655 0.62 +1.1 5,138,662 - BWI76_RS24655 0.64 -3.5 5,138,771 + BWI76_RS24655 0.75 -2.9 5,139,264 - BWI76_RS24660 0.16 +0.2 5,139,284 - BWI76_RS24660 0.17 +0.4 5,139,517 + BWI76_RS24660 0.33 -1.7 5,139,583 - BWI76_RS24660 0.37 +0.4
Or see this region's nucleotide sequence