Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21925 and BWI76_RS21930 are separated by 134 nucleotides BWI76_RS21930 and BWI76_RS21935 overlap by 4 nucleotides
BWI76_RS21925: BWI76_RS21925 - agmatinase, at 4,580,304 to 4,581,275
_RS21925
BWI76_RS21930: BWI76_RS21930 - LysR family transcriptional regulator, at 4,581,410 to 4,582,312
_RS21930
BWI76_RS21935: BWI76_RS21935 - MFS transporter, at 4,582,309 to 4,583,502
_RS21935
Position (kb)
4581
4582
4583 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4580.595 kb on + strand, within BWI76_RS21925 at 4580.630 kb on + strand, within BWI76_RS21925 at 4580.673 kb on + strand, within BWI76_RS21925 at 4580.673 kb on - strand, within BWI76_RS21925 at 4580.998 kb on + strand, within BWI76_RS21925 at 4581.154 kb on + strand, within BWI76_RS21925 at 4581.159 kb on + strand, within BWI76_RS21925 at 4581.167 kb on - strand, within BWI76_RS21925 at 4581.284 kb on + strand at 4581.284 kb on + strand at 4581.284 kb on + strand at 4581.292 kb on - strand at 4581.404 kb on - strand at 4581.483 kb on - strand at 4581.506 kb on - strand, within BWI76_RS21930 at 4581.723 kb on + strand, within BWI76_RS21930 at 4581.811 kb on + strand at 4581.947 kb on + strand, within BWI76_RS21930 at 4582.053 kb on + strand, within BWI76_RS21930 at 4582.101 kb on + strand, within BWI76_RS21930 at 4582.148 kb on + strand, within BWI76_RS21930 at 4582.175 kb on - strand, within BWI76_RS21930 at 4582.253 kb on + strand at 4582.280 kb on - strand at 4582.771 kb on - strand, within BWI76_RS21935 at 4582.831 kb on + strand, within BWI76_RS21935 at 4582.831 kb on + strand, within BWI76_RS21935 at 4582.986 kb on - strand, within BWI76_RS21935 at 4583.084 kb on + strand, within BWI76_RS21935 at 4583.227 kb on + strand, within BWI76_RS21935
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,580,595 + BWI76_RS21925 0.30 +0.7 4,580,630 + BWI76_RS21925 0.34 +1.0 4,580,673 + BWI76_RS21925 0.38 +0.8 4,580,673 - BWI76_RS21925 0.38 -0.6 4,580,998 + BWI76_RS21925 0.71 +1.0 4,581,154 + BWI76_RS21925 0.87 -0.6 4,581,159 + BWI76_RS21925 0.88 -2.8 4,581,167 - BWI76_RS21925 0.89 -2.7 4,581,284 + +1.3 4,581,284 + +1.5 4,581,284 + +0.8 4,581,292 - -1.8 4,581,404 - -0.6 4,581,483 - +0.4 4,581,506 - BWI76_RS21930 0.11 -0.7 4,581,723 + BWI76_RS21930 0.35 -2.2 4,581,811 + -0.1 4,581,947 + BWI76_RS21930 0.59 +0.1 4,582,053 + BWI76_RS21930 0.71 +0.5 4,582,101 + BWI76_RS21930 0.77 +0.7 4,582,148 + BWI76_RS21930 0.82 +0.1 4,582,175 - BWI76_RS21930 0.85 -0.6 4,582,253 + +0.9 4,582,280 - +0.9 4,582,771 - BWI76_RS21935 0.39 +1.1 4,582,831 + BWI76_RS21935 0.44 +0.7 4,582,831 + BWI76_RS21935 0.44 -1.9 4,582,986 - BWI76_RS21935 0.57 +0.8 4,583,084 + BWI76_RS21935 0.65 +0.6 4,583,227 + BWI76_RS21935 0.77 +0.3
Or see this region's nucleotide sequence