Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21380

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS21370 and BWI76_RS21375 are separated by 44 nucleotidesBWI76_RS21375 and BWI76_RS21380 are separated by 311 nucleotidesBWI76_RS21380 and BWI76_RS21385 are separated by 55 nucleotides BWI76_RS21370: BWI76_RS21370 - ATP-dependent RNA helicase SrmB, at 4,473,569 to 4,474,900 _RS21370 BWI76_RS21375: BWI76_RS21375 - autonomous glycyl radical cofactor GrcA, at 4,474,945 to 4,475,328 _RS21375 BWI76_RS21380: BWI76_RS21380 - uracil-DNA glycosylase, at 4,475,640 to 4,476,329 _RS21380 BWI76_RS21385: BWI76_RS21385 - tRNA/rRNA methyltransferase, at 4,476,385 to 4,477,458 _RS21385 Position (kb) 4475 4476 4477Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4475.120 kb on - strand, within BWI76_RS21375at 4475.276 kb on - strand, within BWI76_RS21375at 4475.409 kb on - strandat 4475.499 kb on + strandat 4475.796 kb on - strand, within BWI76_RS21380at 4475.819 kb on - strand, within BWI76_RS21380at 4476.449 kb on - strandat 4476.457 kb on - strandat 4476.489 kb on - strandat 4476.489 kb on - strandat 4476.566 kb on + strand, within BWI76_RS21385at 4476.574 kb on - strand, within BWI76_RS21385at 4476.862 kb on - strand, within BWI76_RS21385at 4477.005 kb on + strand, within BWI76_RS21385at 4477.019 kb on - strand, within BWI76_RS21385at 4477.205 kb on - strand, within BWI76_RS21385at 4477.231 kb on - strand, within BWI76_RS21385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
remove
4,475,120 - BWI76_RS21375 0.46 -0.0
4,475,276 - BWI76_RS21375 0.86 -0.2
4,475,409 - -2.8
4,475,499 + -0.9
4,475,796 - BWI76_RS21380 0.23 +1.9
4,475,819 - BWI76_RS21380 0.26 +0.4
4,476,449 - +0.1
4,476,457 - -0.2
4,476,489 - -3.6
4,476,489 - -0.2
4,476,566 + BWI76_RS21385 0.17 +2.4
4,476,574 - BWI76_RS21385 0.18 -0.8
4,476,862 - BWI76_RS21385 0.44 +0.1
4,477,005 + BWI76_RS21385 0.58 +1.3
4,477,019 - BWI76_RS21385 0.59 -0.0
4,477,205 - BWI76_RS21385 0.76 +0.1
4,477,231 - BWI76_RS21385 0.79 -0.5

Or see this region's nucleotide sequence