Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18185 and BWI76_RS18190 are separated by 39 nucleotides BWI76_RS18190 and BWI76_RS18195 overlap by 4 nucleotides BWI76_RS18195 and BWI76_RS18200 are separated by 100 nucleotides BWI76_RS18200 and BWI76_RS18205 are separated by 76 nucleotides
BWI76_RS18185: BWI76_RS18185 - membrane protein, at 3,778,386 to 3,778,781
_RS18185
BWI76_RS18190: BWI76_RS18190 - carboxy-S-adenosyl-L-methionine synthase CmoA, at 3,778,821 to 3,779,564
_RS18190
BWI76_RS18195: BWI76_RS18195 - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 3,779,561 to 3,780,577
_RS18195
BWI76_RS18200: BWI76_RS18200 - copper homeostasis protein CutC, at 3,780,678 to 3,781,412
_RS18200
BWI76_RS18205: BWI76_RS18205 - VOC family protein, at 3,781,489 to 3,782,058
_RS18205
Position (kb) 3779
3780
3781 Strain fitness (log2 ratio) -2
-1
0
1 at 3778.603 kb on - strand, within BWI76_RS18185 at 3778.605 kb on + strand, within BWI76_RS18185 at 3778.649 kb on + strand, within BWI76_RS18185 at 3778.744 kb on + strand at 3778.752 kb on - strand at 3779.110 kb on - strand, within BWI76_RS18190 at 3779.150 kb on + strand, within BWI76_RS18190 at 3779.775 kb on + strand, within BWI76_RS18195 at 3779.814 kb on + strand, within BWI76_RS18195 at 3780.107 kb on - strand, within BWI76_RS18195 at 3780.317 kb on - strand, within BWI76_RS18195 at 3780.878 kb on + strand, within BWI76_RS18200 at 3780.878 kb on + strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3781.070 kb on - strand, within BWI76_RS18200 at 3781.327 kb on + strand, within BWI76_RS18200
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,778,603 - BWI76_RS18185 0.55 -1.8 3,778,605 + BWI76_RS18185 0.55 +0.2 3,778,649 + BWI76_RS18185 0.66 +0.3 3,778,744 + +0.9 3,778,752 - -0.1 3,779,110 - BWI76_RS18190 0.39 +0.6 3,779,150 + BWI76_RS18190 0.44 -0.8 3,779,775 + BWI76_RS18195 0.21 -2.0 3,779,814 + BWI76_RS18195 0.25 -1.2 3,780,107 - BWI76_RS18195 0.54 +0.6 3,780,317 - BWI76_RS18195 0.74 -1.2 3,780,878 + BWI76_RS18200 0.27 +0.9 3,780,878 + BWI76_RS18200 0.27 -0.0 3,780,886 - BWI76_RS18200 0.28 -0.3 3,780,886 - BWI76_RS18200 0.28 -0.4 3,780,886 - BWI76_RS18200 0.28 +0.7 3,780,886 - BWI76_RS18200 0.28 +0.8 3,780,886 - BWI76_RS18200 0.28 +0.7 3,780,886 - BWI76_RS18200 0.28 -2.1 3,781,070 - BWI76_RS18200 0.53 +0.3 3,781,327 + BWI76_RS18200 0.88 +0.8
Or see this region's nucleotide sequence