Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17050 and BWI76_RS17055 are separated by 203 nucleotides BWI76_RS17055 and BWI76_RS17065 are separated by 400 nucleotides
BWI76_RS17050: BWI76_RS17050 - FAD-binding oxidoreductase, at 3,535,278 to 3,538,334
_RS17050
BWI76_RS17055: BWI76_RS17055 - hypothetical protein, at 3,538,538 to 3,539,659
_RS17055
BWI76_RS17065: BWI76_RS17065 - phosphoenolpyruvate synthase, at 3,540,060 to 3,542,438
_RS17065
Position (kb)
3538
3539
3540 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3537.675 kb on - strand, within BWI76_RS17050 at 3537.685 kb on + strand, within BWI76_RS17050 at 3537.858 kb on - strand, within BWI76_RS17050 at 3537.880 kb on + strand, within BWI76_RS17050 at 3538.096 kb on - strand at 3538.096 kb on - strand at 3538.214 kb on + strand at 3538.214 kb on + strand at 3538.372 kb on + strand at 3538.487 kb on + strand at 3538.524 kb on + strand at 3538.574 kb on + strand at 3538.643 kb on - strand at 3538.665 kb on - strand, within BWI76_RS17055 at 3538.813 kb on - strand, within BWI76_RS17055 at 3538.896 kb on + strand, within BWI76_RS17055 at 3538.903 kb on + strand, within BWI76_RS17055 at 3538.903 kb on + strand, within BWI76_RS17055 at 3538.911 kb on - strand, within BWI76_RS17055 at 3539.053 kb on + strand, within BWI76_RS17055 at 3539.214 kb on - strand, within BWI76_RS17055 at 3539.214 kb on - strand, within BWI76_RS17055 at 3539.232 kb on + strand, within BWI76_RS17055 at 3539.240 kb on - strand, within BWI76_RS17055 at 3539.325 kb on - strand, within BWI76_RS17055 at 3539.439 kb on - strand, within BWI76_RS17055 at 3539.555 kb on - strand at 3539.569 kb on + strand at 3539.706 kb on - strand at 3539.940 kb on + strand at 3539.940 kb on + strand at 3540.597 kb on - strand, within BWI76_RS17065
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,537,675 - BWI76_RS17050 0.78 -1.0 3,537,685 + BWI76_RS17050 0.79 +0.4 3,537,858 - BWI76_RS17050 0.84 -0.1 3,537,880 + BWI76_RS17050 0.85 -2.9 3,538,096 - -0.3 3,538,096 - +0.1 3,538,214 + +0.6 3,538,214 + -1.3 3,538,372 + +0.3 3,538,487 + -0.8 3,538,524 + -0.8 3,538,574 + +1.1 3,538,643 - +1.0 3,538,665 - BWI76_RS17055 0.11 -3.1 3,538,813 - BWI76_RS17055 0.25 -0.6 3,538,896 + BWI76_RS17055 0.32 +1.5 3,538,903 + BWI76_RS17055 0.33 +0.8 3,538,903 + BWI76_RS17055 0.33 -0.0 3,538,911 - BWI76_RS17055 0.33 -0.7 3,539,053 + BWI76_RS17055 0.46 -0.5 3,539,214 - BWI76_RS17055 0.60 +1.7 3,539,214 - BWI76_RS17055 0.60 -0.5 3,539,232 + BWI76_RS17055 0.62 +0.1 3,539,240 - BWI76_RS17055 0.63 +2.0 3,539,325 - BWI76_RS17055 0.70 +1.1 3,539,439 - BWI76_RS17055 0.80 +0.8 3,539,555 - +0.5 3,539,569 + -3.0 3,539,706 - -0.6 3,539,940 + -1.6 3,539,940 + +0.6 3,540,597 - BWI76_RS17065 0.23 +0.1
Or see this region's nucleotide sequence