Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14890

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS14880 and BWI76_RS14885 are separated by 16 nucleotidesBWI76_RS14885 and BWI76_RS14890 are separated by 20 nucleotidesBWI76_RS14890 and BWI76_RS14895 are separated by 11 nucleotidesBWI76_RS14895 and BWI76_RS14900 are separated by 16 nucleotides BWI76_RS14880: BWI76_RS14880 - putative fructose-bisphosphate aldolase, class 1, at 3,118,323 to 3,119,111 _RS14880 BWI76_RS14885: BWI76_RS14885 - putative glycerol uptake operon antiterminator, at 3,119,128 to 3,119,679 _RS14885 BWI76_RS14890: BWI76_RS14890 - carbohydrate kinase, at 3,119,700 to 3,121,238 _RS14890 BWI76_RS14895: BWI76_RS14895 - 3-oxoacyl-ACP reductase, at 3,121,250 to 3,122,011 _RS14895 BWI76_RS14900: BWI76_RS14900 - oxidoreductase, at 3,122,028 to 3,123,023 _RS14900 Position (kb) 3119 3120 3121 3122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3118.764 kb on + strand, within BWI76_RS14880at 3118.882 kb on - strand, within BWI76_RS14880at 3118.969 kb on + strand, within BWI76_RS14880at 3118.969 kb on + strand, within BWI76_RS14880at 3118.971 kb on + strand, within BWI76_RS14880at 3118.971 kb on + strand, within BWI76_RS14880at 3118.971 kb on + strand, within BWI76_RS14880at 3118.975 kb on - strand, within BWI76_RS14880at 3118.976 kb on + strand, within BWI76_RS14880at 3118.977 kb on - strand, within BWI76_RS14880at 3118.977 kb on - strand, within BWI76_RS14880at 3118.977 kb on - strand, within BWI76_RS14880at 3118.979 kb on - strand, within BWI76_RS14880at 3118.984 kb on - strand, within BWI76_RS14880at 3118.990 kb on - strandat 3119.008 kb on + strand, within BWI76_RS14880at 3119.008 kb on + strand, within BWI76_RS14880at 3119.046 kb on + strandat 3119.046 kb on + strandat 3119.046 kb on + strandat 3119.054 kb on - strandat 3119.054 kb on - strandat 3119.054 kb on - strandat 3119.077 kb on - strandat 3119.089 kb on + strandat 3119.096 kb on - strandat 3119.096 kb on - strandat 3119.103 kb on - strandat 3119.104 kb on - strandat 3119.105 kb on + strandat 3119.105 kb on + strandat 3119.105 kb on + strandat 3119.113 kb on - strandat 3119.185 kb on + strand, within BWI76_RS14885at 3119.190 kb on + strand, within BWI76_RS14885at 3119.198 kb on - strand, within BWI76_RS14885at 3119.212 kb on + strand, within BWI76_RS14885at 3119.309 kb on - strand, within BWI76_RS14885at 3119.325 kb on + strand, within BWI76_RS14885at 3119.357 kb on + strand, within BWI76_RS14885at 3119.358 kb on + strand, within BWI76_RS14885at 3119.366 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strandat 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.397 kb on - strandat 3119.397 kb on - strandat 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strandat 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.429 kb on + strand, within BWI76_RS14885at 3119.437 kb on + strand, within BWI76_RS14885at 3119.437 kb on + strand, within BWI76_RS14885at 3119.447 kb on + strand, within BWI76_RS14885at 3119.447 kb on + strand, within BWI76_RS14885at 3119.456 kb on + strand, within BWI76_RS14885at 3119.456 kb on + strand, within BWI76_RS14885at 3119.456 kb on + strand, within BWI76_RS14885at 3119.460 kb on + strand, within BWI76_RS14885at 3119.464 kb on - strandat 3119.484 kb on + strand, within BWI76_RS14885at 3119.492 kb on - strand, within BWI76_RS14885at 3119.503 kb on + strand, within BWI76_RS14885at 3119.521 kb on + strand, within BWI76_RS14885at 3119.537 kb on + strand, within BWI76_RS14885at 3119.567 kb on + strand, within BWI76_RS14885at 3119.602 kb on - strand, within BWI76_RS14885at 3119.607 kb on + strand, within BWI76_RS14885at 3119.650 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.688 kb on - strandat 3119.688 kb on - strandat 3119.690 kb on - strandat 3119.690 kb on - strandat 3119.723 kb on - strandat 3119.965 kb on - strand, within BWI76_RS14890at 3119.982 kb on + strand, within BWI76_RS14890at 3120.018 kb on + strand, within BWI76_RS14890at 3120.024 kb on - strand, within BWI76_RS14890at 3120.394 kb on - strand, within BWI76_RS14890at 3120.643 kb on + strand, within BWI76_RS14890at 3120.859 kb on - strand, within BWI76_RS14890at 3120.909 kb on - strand, within BWI76_RS14890at 3120.912 kb on + strand, within BWI76_RS14890at 3121.380 kb on + strand, within BWI76_RS14895at 3121.380 kb on + strand, within BWI76_RS14895at 3121.533 kb on + strand, within BWI76_RS14895at 3121.586 kb on - strand, within BWI76_RS14895at 3121.691 kb on - strand, within BWI76_RS14895at 3121.810 kb on - strand, within BWI76_RS14895at 3121.821 kb on + strand, within BWI76_RS14895at 3121.976 kb on + strandat 3121.982 kb on + strandat 3122.090 kb on - strandat 3122.188 kb on + strand, within BWI76_RS14900at 3122.196 kb on - strand, within BWI76_RS14900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
remove
3,118,764 + BWI76_RS14880 0.56 -0.7
3,118,882 - BWI76_RS14880 0.71 -1.9
3,118,969 + BWI76_RS14880 0.82 -1.7
3,118,969 + BWI76_RS14880 0.82 -1.9
3,118,971 + BWI76_RS14880 0.82 -2.5
3,118,971 + BWI76_RS14880 0.82 -0.2
3,118,971 + BWI76_RS14880 0.82 -2.8
3,118,975 - BWI76_RS14880 0.83 -2.3
3,118,976 + BWI76_RS14880 0.83 -0.8
3,118,977 - BWI76_RS14880 0.83 -0.7
3,118,977 - BWI76_RS14880 0.83 +1.0
3,118,977 - BWI76_RS14880 0.83 +0.6
3,118,979 - BWI76_RS14880 0.83 -1.4
3,118,984 - BWI76_RS14880 0.84 -2.5
3,118,990 - -1.5
3,119,008 + BWI76_RS14880 0.87 -0.7
3,119,008 + BWI76_RS14880 0.87 -1.6
3,119,046 + -0.6
3,119,046 + -1.9
3,119,046 + -2.2
3,119,054 - +1.3
3,119,054 - -0.1
3,119,054 - -0.7
3,119,077 - +0.9
3,119,089 + -1.9
3,119,096 - +2.2
3,119,096 - -2.5
3,119,103 - -0.7
3,119,104 - -1.3
3,119,105 + -1.5
3,119,105 + +0.9
3,119,105 + +1.4
3,119,113 - -0.7
3,119,185 + BWI76_RS14885 0.10 +1.0
3,119,190 + BWI76_RS14885 0.11 -1.1
3,119,198 - BWI76_RS14885 0.13 +1.3
3,119,212 + BWI76_RS14885 0.15 -0.1
3,119,309 - BWI76_RS14885 0.33 -0.3
3,119,325 + BWI76_RS14885 0.36 -3.0
3,119,357 + BWI76_RS14885 0.41 -0.4
3,119,358 + BWI76_RS14885 0.42 -1.1
3,119,366 + BWI76_RS14885 0.43 -0.7
3,119,389 + BWI76_RS14885 0.47 -2.6
3,119,389 + BWI76_RS14885 0.47 +0.2
3,119,389 + BWI76_RS14885 0.47 -0.4
3,119,389 + BWI76_RS14885 0.47 -1.5
3,119,389 + BWI76_RS14885 0.47 -1.6
3,119,389 + BWI76_RS14885 0.47 -0.4
3,119,389 + BWI76_RS14885 0.47 -0.8
3,119,389 + BWI76_RS14885 0.47 -0.7
3,119,389 + BWI76_RS14885 0.47 -0.4
3,119,389 + BWI76_RS14885 0.47 +0.1
3,119,389 + BWI76_RS14885 0.47 +1.0
3,119,389 + BWI76_RS14885 0.47 -0.0
3,119,389 + BWI76_RS14885 0.47 -2.5
3,119,389 + BWI76_RS14885 0.47 -0.6
3,119,389 + BWI76_RS14885 0.47 -2.7
3,119,389 + BWI76_RS14885 0.47 -4.2
3,119,389 + BWI76_RS14885 0.47 +0.4
3,119,389 + BWI76_RS14885 0.47 -0.7
3,119,389 + BWI76_RS14885 0.47 -1.3
3,119,389 + BWI76_RS14885 0.47 -0.3
3,119,389 + BWI76_RS14885 0.47 -0.9
3,119,389 + BWI76_RS14885 0.47 -0.4
3,119,389 + BWI76_RS14885 0.47 +0.2
3,119,389 + BWI76_RS14885 0.47 +0.3
3,119,389 + BWI76_RS14885 0.47 -0.7
3,119,389 + BWI76_RS14885 0.47 -1.0
3,119,389 + BWI76_RS14885 0.47 -0.1
3,119,389 + BWI76_RS14885 0.47 +4.7
3,119,389 + BWI76_RS14885 0.47 +0.3
3,119,389 + BWI76_RS14885 0.47 +1.4
3,119,389 + BWI76_RS14885 0.47 -2.3
3,119,389 + BWI76_RS14885 0.47 +1.4
3,119,389 + BWI76_RS14885 0.47 -2.4
3,119,389 + BWI76_RS14885 0.47 +1.7
3,119,389 + BWI76_RS14885 0.47 +0.7
3,119,389 + BWI76_RS14885 0.47 -1.3
3,119,389 + BWI76_RS14885 0.47 -0.7
3,119,389 + BWI76_RS14885 0.47 -3.0
3,119,389 + -0.1
3,119,389 + BWI76_RS14885 0.47 +0.9
3,119,389 + BWI76_RS14885 0.47 -0.6
3,119,389 + BWI76_RS14885 0.47 -1.3
3,119,389 + BWI76_RS14885 0.47 +0.0
3,119,389 + BWI76_RS14885 0.47 +0.3
3,119,389 + BWI76_RS14885 0.47 +0.3
3,119,389 + BWI76_RS14885 0.47 +0.9
3,119,389 + BWI76_RS14885 0.47 -2.2
3,119,389 + BWI76_RS14885 0.47 -1.7
3,119,389 + BWI76_RS14885 0.47 -0.2
3,119,389 + BWI76_RS14885 0.47 +1.4
3,119,389 + BWI76_RS14885 0.47 -0.7
3,119,389 + BWI76_RS14885 0.47 -0.1
3,119,389 + BWI76_RS14885 0.47 +0.5
3,119,389 + BWI76_RS14885 0.47 +0.4
3,119,389 + BWI76_RS14885 0.47 -1.5
3,119,397 - -1.1
3,119,397 - +0.9
3,119,397 - BWI76_RS14885 0.49 +1.9
3,119,397 - BWI76_RS14885 0.49 -0.1
3,119,397 - BWI76_RS14885 0.49 -1.1
3,119,397 - BWI76_RS14885 0.49 -0.7
3,119,397 - BWI76_RS14885 0.49 -0.7
3,119,397 - BWI76_RS14885 0.49 -1.5
3,119,397 - BWI76_RS14885 0.49 +0.9
3,119,397 - BWI76_RS14885 0.49 -1.5
3,119,397 - BWI76_RS14885 0.49 -1.7
3,119,397 - BWI76_RS14885 0.49 -0.7
3,119,397 - BWI76_RS14885 0.49 -1.5
3,119,397 - +0.9
3,119,397 - BWI76_RS14885 0.49 -0.7
3,119,397 - BWI76_RS14885 0.49 +0.0
3,119,397 - BWI76_RS14885 0.49 +0.9
3,119,397 - BWI76_RS14885 0.49 +1.9
3,119,429 + BWI76_RS14885 0.55 +0.4
3,119,437 + BWI76_RS14885 0.56 -1.1
3,119,437 + BWI76_RS14885 0.56 +0.3
3,119,447 + BWI76_RS14885 0.58 +1.0
3,119,447 + BWI76_RS14885 0.58 +0.7
3,119,456 + BWI76_RS14885 0.59 +0.3
3,119,456 + BWI76_RS14885 0.59 -0.7
3,119,456 + BWI76_RS14885 0.59 +0.3
3,119,460 + BWI76_RS14885 0.60 +0.5
3,119,464 - -1.5
3,119,484 + BWI76_RS14885 0.64 -0.1
3,119,492 - BWI76_RS14885 0.66 -1.7
3,119,503 + BWI76_RS14885 0.68 -1.3
3,119,521 + BWI76_RS14885 0.71 -2.1
3,119,537 + BWI76_RS14885 0.74 -2.3
3,119,567 + BWI76_RS14885 0.80 -0.7
3,119,602 - BWI76_RS14885 0.86 +1.4
3,119,607 + BWI76_RS14885 0.87 +0.0
3,119,650 + -0.7
3,119,680 + +0.3
3,119,680 + +0.6
3,119,680 + +0.8
3,119,680 + +1.3
3,119,680 + +0.9
3,119,680 + +0.3
3,119,680 + -0.1
3,119,680 + +2.5
3,119,680 + +0.4
3,119,680 + -0.2
3,119,680 + +0.7
3,119,680 + -0.1
3,119,680 + +0.9
3,119,680 + -1.1
3,119,680 + -1.5
3,119,680 + +1.7
3,119,680 + -1.0
3,119,680 + -2.5
3,119,680 + -1.7
3,119,680 + -1.1
3,119,680 + -0.5
3,119,688 - -0.1
3,119,688 - -3.1
3,119,690 - -0.4
3,119,690 - -1.7
3,119,723 - -1.3
3,119,965 - BWI76_RS14890 0.17 +0.6
3,119,982 + BWI76_RS14890 0.18 +0.6
3,120,018 + BWI76_RS14890 0.21 +0.5
3,120,024 - BWI76_RS14890 0.21 -3.4
3,120,394 - BWI76_RS14890 0.45 +1.1
3,120,643 + BWI76_RS14890 0.61 +0.1
3,120,859 - BWI76_RS14890 0.75 -1.1
3,120,909 - BWI76_RS14890 0.79 +0.2
3,120,912 + BWI76_RS14890 0.79 +1.6
3,121,380 + BWI76_RS14895 0.17 +0.3
3,121,380 + BWI76_RS14895 0.17 +0.1
3,121,533 + BWI76_RS14895 0.37 +0.8
3,121,586 - BWI76_RS14895 0.44 -2.1
3,121,691 - BWI76_RS14895 0.58 -1.0
3,121,810 - BWI76_RS14895 0.73 +0.3
3,121,821 + BWI76_RS14895 0.75 +4.4
3,121,976 + +0.6
3,121,982 + -2.3
3,122,090 - -3.1
3,122,188 + BWI76_RS14900 0.16 -0.4
3,122,196 - BWI76_RS14900 0.17 -2.7

Or see this region's nucleotide sequence