Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14870 and BWI76_RS14875 overlap by 1 nucleotides BWI76_RS14875 and BWI76_RS14880 are separated by 673 nucleotides
BWI76_RS14870: BWI76_RS14870 - hypothetical protein, at 3,115,338 to 3,116,705
_RS14870
BWI76_RS14875: BWI76_RS14875 - ribokinase-like domain-containing protein, at 3,116,705 to 3,117,649
_RS14875
BWI76_RS14880: BWI76_RS14880 - putative fructose-bisphosphate aldolase, class 1, at 3,118,323 to 3,119,111
_RS14880
Position (kb) 3116
3117
3118 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3116.071 kb on - strand, within BWI76_RS14870 at 3117.068 kb on + strand, within BWI76_RS14875 at 3117.093 kb on - strand, within BWI76_RS14875 at 3117.485 kb on - strand, within BWI76_RS14875 at 3117.487 kb on + strand, within BWI76_RS14875 at 3117.583 kb on + strand at 3117.599 kb on + strand at 3117.636 kb on + strand at 3117.644 kb on - strand at 3117.644 kb on - strand at 3117.681 kb on - strand at 3117.847 kb on + strand at 3117.847 kb on - strand at 3117.859 kb on - strand at 3117.893 kb on - strand at 3117.933 kb on - strand at 3117.942 kb on + strand at 3117.950 kb on + strand at 3117.950 kb on - strand at 3117.952 kb on + strand at 3117.957 kb on + strand at 3117.957 kb on + strand at 3117.958 kb on - strand at 3117.965 kb on - strand at 3117.982 kb on + strand at 3117.983 kb on + strand at 3118.050 kb on - strand at 3118.085 kb on + strand at 3118.094 kb on - strand at 3118.105 kb on + strand at 3118.105 kb on + strand at 3118.105 kb on + strand at 3118.113 kb on - strand at 3118.127 kb on - strand at 3118.245 kb on + strand at 3118.245 kb on + strand at 3118.254 kb on + strand at 3118.321 kb on - strand at 3118.386 kb on - strand at 3118.390 kb on - strand at 3118.444 kb on + strand, within BWI76_RS14880 at 3118.477 kb on - strand, within BWI76_RS14880 at 3118.477 kb on - strand, within BWI76_RS14880 at 3118.477 kb on - strand, within BWI76_RS14880 at 3118.477 kb on - strand, within BWI76_RS14880 at 3118.479 kb on + strand, within BWI76_RS14880 at 3118.479 kb on + strand, within BWI76_RS14880 at 3118.536 kb on + strand, within BWI76_RS14880 at 3118.544 kb on - strand, within BWI76_RS14880 at 3118.544 kb on - strand, within BWI76_RS14880 at 3118.557 kb on - strand, within BWI76_RS14880 at 3118.635 kb on + strand, within BWI76_RS14880 at 3118.643 kb on - strand, within BWI76_RS14880
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,116,071 - BWI76_RS14870 0.54 -1.1 3,117,068 + BWI76_RS14875 0.38 +0.3 3,117,093 - BWI76_RS14875 0.41 +0.5 3,117,485 - BWI76_RS14875 0.83 +0.5 3,117,487 + BWI76_RS14875 0.83 -0.5 3,117,583 + +0.6 3,117,599 + +0.1 3,117,636 + -0.2 3,117,644 - -3.3 3,117,644 - -0.5 3,117,681 - -2.1 3,117,847 + +0.1 3,117,847 - +0.9 3,117,859 - -0.1 3,117,893 - +1.3 3,117,933 - -0.1 3,117,942 + +0.2 3,117,950 + -1.1 3,117,950 - -1.3 3,117,952 + +1.4 3,117,957 + +0.9 3,117,957 + +0.6 3,117,958 - +0.1 3,117,965 - +1.3 3,117,982 + -0.6 3,117,983 + +1.2 3,118,050 - +0.9 3,118,085 + +0.3 3,118,094 - -0.0 3,118,105 + +0.1 3,118,105 + +1.4 3,118,105 + +2.2 3,118,113 - +0.6 3,118,127 - -1.5 3,118,245 + -0.0 3,118,245 + +0.4 3,118,254 + +0.6 3,118,321 - +0.6 3,118,386 - -1.7 3,118,390 - -0.7 3,118,444 + BWI76_RS14880 0.15 -1.5 3,118,477 - BWI76_RS14880 0.20 -1.2 3,118,477 - BWI76_RS14880 0.20 +1.9 3,118,477 - BWI76_RS14880 0.20 -2.1 3,118,477 - BWI76_RS14880 0.20 -0.6 3,118,479 + BWI76_RS14880 0.20 -1.4 3,118,479 + BWI76_RS14880 0.20 -1.1 3,118,536 + BWI76_RS14880 0.27 -0.4 3,118,544 - BWI76_RS14880 0.28 -1.9 3,118,544 - BWI76_RS14880 0.28 +1.2 3,118,557 - BWI76_RS14880 0.30 -4.4 3,118,635 + BWI76_RS14880 0.40 -2.1 3,118,643 - BWI76_RS14880 0.41 -2.1
Or see this region's nucleotide sequence