Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13950 and BWI76_RS13955 are separated by 43 nucleotides BWI76_RS13955 and BWI76_RS13960 are separated by 346 nucleotides BWI76_RS13960 and BWI76_RS13965 are separated by 24 nucleotides BWI76_RS13965 and BWI76_RS13970 overlap by 4 nucleotides
BWI76_RS13950: BWI76_RS13950 - hypothetical protein, at 2,912,387 to 2,913,079
_RS13950
BWI76_RS13955: BWI76_RS13955 - hypothetical protein, at 2,913,123 to 2,913,725
_RS13955
BWI76_RS13960: BWI76_RS13960 - urea ABC transporter periplasmic protein, at 2,914,072 to 2,915,130
_RS13960
BWI76_RS13965: BWI76_RS13965 - binding-protein-dependent transport system inner membrane protein, at 2,915,155 to 2,915,970
_RS13965
BWI76_RS13970: BWI76_RS13970 - ABC transporter, at 2,915,967 to 2,916,743
_RS13970
Position (kb)
2914
2915
2916 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2913.300 kb on + strand, within BWI76_RS13955 at 2913.662 kb on - strand, within BWI76_RS13955 at 2913.747 kb on + strand at 2913.947 kb on + strand at 2913.953 kb on + strand at 2913.993 kb on - strand at 2914.099 kb on + strand at 2914.175 kb on - strand at 2914.626 kb on + strand, within BWI76_RS13960 at 2914.686 kb on - strand, within BWI76_RS13960 at 2914.688 kb on - strand, within BWI76_RS13960 at 2914.768 kb on + strand, within BWI76_RS13960 at 2915.563 kb on - strand, within BWI76_RS13965 at 2915.752 kb on - strand, within BWI76_RS13965 at 2916.018 kb on + strand at 2916.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 2,913,300 + BWI76_RS13955 0.29 +2.2 2,913,662 - BWI76_RS13955 0.89 -0.3 2,913,747 + -0.2 2,913,947 + +1.5 2,913,953 + -0.9 2,913,993 - +1.1 2,914,099 + -2.3 2,914,175 - +0.4 2,914,626 + BWI76_RS13960 0.52 -1.1 2,914,686 - BWI76_RS13960 0.58 -1.6 2,914,688 - BWI76_RS13960 0.58 -0.1 2,914,768 + BWI76_RS13960 0.66 -1.4 2,915,563 - BWI76_RS13965 0.50 -0.3 2,915,752 - BWI76_RS13965 0.73 -1.2 2,916,018 + +2.4 2,916,026 - +2.5
Or see this region's nucleotide sequence