Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13795

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13785 and BWI76_RS13790 overlap by 4 nucleotidesBWI76_RS13790 and BWI76_RS13795 are separated by 10 nucleotidesBWI76_RS13795 and BWI76_RS13800 are separated by 383 nucleotides BWI76_RS13785: BWI76_RS13785 - ABC transporter permease, at 2,874,685 to 2,875,536 _RS13785 BWI76_RS13790: BWI76_RS13790 - peptide ABC transporter permease, at 2,875,533 to 2,876,477 _RS13790 BWI76_RS13795: BWI76_RS13795 - ABC transporter substrate binding protein, at 2,876,488 to 2,878,110 _RS13795 BWI76_RS13800: BWI76_RS13800 - zinc-dependent alcohol dehydrogenase, at 2,878,494 to 2,879,504 _RS13800 Position (kb) 2876 2877 2878 2879Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2875.640 kb on - strand, within BWI76_RS13790at 2875.700 kb on - strand, within BWI76_RS13790at 2875.855 kb on + strand, within BWI76_RS13790at 2875.877 kb on + strand, within BWI76_RS13790at 2875.877 kb on + strand, within BWI76_RS13790at 2875.885 kb on - strand, within BWI76_RS13790at 2875.885 kb on - strand, within BWI76_RS13790at 2875.994 kb on + strand, within BWI76_RS13790at 2876.486 kb on + strandat 2876.494 kb on - strandat 2876.549 kb on + strandat 2876.621 kb on + strandat 2876.639 kb on - strandat 2876.898 kb on + strand, within BWI76_RS13795at 2877.017 kb on - strand, within BWI76_RS13795at 2877.091 kb on + strand, within BWI76_RS13795at 2877.096 kb on + strand, within BWI76_RS13795at 2877.160 kb on - strand, within BWI76_RS13795at 2877.164 kb on + strand, within BWI76_RS13795at 2877.165 kb on - strand, within BWI76_RS13795at 2877.347 kb on + strand, within BWI76_RS13795at 2877.808 kb on + strand, within BWI76_RS13795at 2877.808 kb on + strand, within BWI76_RS13795at 2877.816 kb on - strand, within BWI76_RS13795at 2877.816 kb on - strand, within BWI76_RS13795at 2878.274 kb on - strandat 2878.320 kb on + strandat 2878.322 kb on - strandat 2878.326 kb on + strandat 2878.419 kb on + strandat 2878.514 kb on + strandat 2878.537 kb on + strandat 2878.670 kb on + strand, within BWI76_RS13800at 2878.680 kb on + strand, within BWI76_RS13800at 2878.925 kb on + strand, within BWI76_RS13800at 2878.968 kb on + strand, within BWI76_RS13800at 2879.023 kb on + strand, within BWI76_RS13800

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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2,875,640 - BWI76_RS13790 0.11 +0.2
2,875,700 - BWI76_RS13790 0.18 +0.0
2,875,855 + BWI76_RS13790 0.34 +0.8
2,875,877 + BWI76_RS13790 0.36 +0.7
2,875,877 + BWI76_RS13790 0.36 +0.9
2,875,885 - BWI76_RS13790 0.37 +0.4
2,875,885 - BWI76_RS13790 0.37 +0.7
2,875,994 + BWI76_RS13790 0.49 -1.1
2,876,486 + +0.1
2,876,494 - +0.4
2,876,549 + +0.6
2,876,621 + +2.1
2,876,639 - -1.6
2,876,898 + BWI76_RS13795 0.25 -0.3
2,877,017 - BWI76_RS13795 0.33 -1.6
2,877,091 + BWI76_RS13795 0.37 +0.9
2,877,096 + BWI76_RS13795 0.37 -1.0
2,877,160 - BWI76_RS13795 0.41 -3.5
2,877,164 + BWI76_RS13795 0.42 -0.6
2,877,165 - BWI76_RS13795 0.42 +0.8
2,877,347 + BWI76_RS13795 0.53 +0.2
2,877,808 + BWI76_RS13795 0.81 -1.2
2,877,808 + BWI76_RS13795 0.81 -2.5
2,877,816 - BWI76_RS13795 0.82 -1.7
2,877,816 - BWI76_RS13795 0.82 +0.1
2,878,274 - -0.1
2,878,320 + +0.8
2,878,322 - +0.9
2,878,326 + -1.1
2,878,419 + -0.2
2,878,514 + +0.5
2,878,537 + +2.5
2,878,670 + BWI76_RS13800 0.17 -2.9
2,878,680 + BWI76_RS13800 0.18 -0.1
2,878,925 + BWI76_RS13800 0.43 +1.3
2,878,968 + BWI76_RS13800 0.47 +0.8
2,879,023 + BWI76_RS13800 0.52 -1.3

Or see this region's nucleotide sequence