Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11040

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11035 and BWI76_RS11040 are separated by 35 nucleotidesBWI76_RS11040 and BWI76_RS11045 are separated by 307 nucleotidesBWI76_RS11045 and BWI76_RS11050 are separated by 189 nucleotides BWI76_RS11035: BWI76_RS11035 - putative LysR-family transcriptional regulator, at 2,327,538 to 2,328,473 _RS11035 BWI76_RS11040: BWI76_RS11040 - ribonuclease E, at 2,328,509 to 2,331,757 _RS11040 BWI76_RS11045: BWI76_RS11045 - hypothetical protein, at 2,332,065 to 2,332,223 _RS11045 BWI76_RS11050: BWI76_RS11050 - 23S rRNA pseudouridine(955/2504/2580) synthase, at 2,332,413 to 2,333,408 _RS11050 Position (kb) 2328 2329 2330 2331 2332Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2327.590 kb on + strandat 2327.975 kb on - strand, within BWI76_RS11035at 2328.121 kb on + strand, within BWI76_RS11035at 2328.790 kb on + strandat 2329.150 kb on - strand, within BWI76_RS11040at 2329.743 kb on - strand, within BWI76_RS11040at 2332.246 kb on - strandat 2332.334 kb on - strandat 2332.375 kb on + strandat 2332.420 kb on + strandat 2332.541 kb on + strand, within BWI76_RS11050at 2332.547 kb on - strand, within BWI76_RS11050at 2332.547 kb on - strand, within BWI76_RS11050at 2332.549 kb on - strand, within BWI76_RS11050at 2332.549 kb on - strand, within BWI76_RS11050at 2332.585 kb on + strand, within BWI76_RS11050at 2332.699 kb on + strand, within BWI76_RS11050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
remove
2,327,590 + -2.0
2,327,975 - BWI76_RS11035 0.47 -0.6
2,328,121 + BWI76_RS11035 0.62 -0.3
2,328,790 + +4.0
2,329,150 - BWI76_RS11040 0.20 +1.7
2,329,743 - BWI76_RS11040 0.38 -0.0
2,332,246 - +2.3
2,332,334 - +0.2
2,332,375 + +0.8
2,332,420 + -1.3
2,332,541 + BWI76_RS11050 0.13 -1.3
2,332,547 - BWI76_RS11050 0.13 +0.5
2,332,547 - BWI76_RS11050 0.13 -2.1
2,332,549 - BWI76_RS11050 0.14 -1.9
2,332,549 - BWI76_RS11050 0.14 +1.4
2,332,585 + BWI76_RS11050 0.17 -1.3
2,332,699 + BWI76_RS11050 0.29 -1.6

Or see this region's nucleotide sequence