Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09360 and BWI76_RS09365 are separated by 149 nucleotides BWI76_RS09365 and BWI76_RS09370 are separated by 9 nucleotides BWI76_RS09370 and BWI76_RS09375 are separated by 52 nucleotides BWI76_RS09375 and BWI76_RS09380 are separated by 14 nucleotides
BWI76_RS09360: BWI76_RS09360 - hypothetical protein, at 1,964,268 to 1,965,338
_RS09360
BWI76_RS09365: BWI76_RS09365 - phage tail sheath protein, at 1,965,488 to 1,966,660
_RS09365
BWI76_RS09370: BWI76_RS09370 - major tail tube protein, at 1,966,670 to 1,967,185
_RS09370
BWI76_RS09375: BWI76_RS09375 - phage tail protein, at 1,967,238 to 1,967,537
_RS09375
BWI76_RS09380: BWI76_RS09380 - GpE family phage tail protein, at 1,967,552 to 1,967,671
_RS09380
Position (kb) 1965
1966
1967 Strain fitness (log2 ratio) -2
-1
0
1 at 1964.510 kb on + strand, within BWI76_RS09360 at 1964.518 kb on - strand, within BWI76_RS09360 at 1964.518 kb on - strand, within BWI76_RS09360 at 1964.541 kb on - strand, within BWI76_RS09360 at 1964.723 kb on - strand, within BWI76_RS09360 at 1964.723 kb on - strand, within BWI76_RS09360 at 1964.925 kb on + strand, within BWI76_RS09360 at 1964.970 kb on - strand, within BWI76_RS09360 at 1965.357 kb on + strand at 1965.502 kb on + strand at 1965.740 kb on - strand, within BWI76_RS09365 at 1965.754 kb on + strand, within BWI76_RS09365 at 1965.847 kb on + strand, within BWI76_RS09365 at 1965.922 kb on - strand, within BWI76_RS09365 at 1966.008 kb on + strand, within BWI76_RS09365 at 1966.026 kb on - strand at 1966.209 kb on - strand, within BWI76_RS09365 at 1966.219 kb on - strand, within BWI76_RS09365 at 1966.350 kb on - strand, within BWI76_RS09365 at 1966.449 kb on + strand, within BWI76_RS09365 at 1966.667 kb on + strand at 1966.667 kb on + strand at 1967.185 kb on + strand at 1967.347 kb on + strand, within BWI76_RS09375 at 1967.482 kb on + strand, within BWI76_RS09375
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,964,510 + BWI76_RS09360 0.23 +1.0 1,964,518 - BWI76_RS09360 0.23 -1.4 1,964,518 - BWI76_RS09360 0.23 -1.6 1,964,541 - BWI76_RS09360 0.25 -0.4 1,964,723 - BWI76_RS09360 0.42 -0.8 1,964,723 - BWI76_RS09360 0.42 +0.6 1,964,925 + BWI76_RS09360 0.61 -1.3 1,964,970 - BWI76_RS09360 0.66 -0.3 1,965,357 + -0.3 1,965,502 + +1.0 1,965,740 - BWI76_RS09365 0.21 +1.1 1,965,754 + BWI76_RS09365 0.23 -1.0 1,965,847 + BWI76_RS09365 0.31 +1.1 1,965,922 - BWI76_RS09365 0.37 +1.5 1,966,008 + BWI76_RS09365 0.44 -0.6 1,966,026 - -0.0 1,966,209 - BWI76_RS09365 0.61 +0.9 1,966,219 - BWI76_RS09365 0.62 +0.2 1,966,350 - BWI76_RS09365 0.73 +0.2 1,966,449 + BWI76_RS09365 0.82 -0.0 1,966,667 + -2.5 1,966,667 + +0.1 1,967,185 + +0.3 1,967,347 + BWI76_RS09375 0.36 -0.4 1,967,482 + BWI76_RS09375 0.81 -0.7
Or see this region's nucleotide sequence