Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05970 and BWI76_RS05975 are separated by 107 nucleotides BWI76_RS05975 and BWI76_RS05980 overlap by 8 nucleotides BWI76_RS05980 and BWI76_RS05985 overlap by 14 nucleotides
BWI76_RS05970: BWI76_RS05970 - hypothetical protein, at 1,253,745 to 1,253,927
_RS05970
BWI76_RS05975: BWI76_RS05975 - ABC transporter ATP-binding protein, at 1,254,035 to 1,254,730
_RS05975
BWI76_RS05980: BWI76_RS05980 - ABC transporter ATP-binding protein, at 1,254,723 to 1,255,505
_RS05980
BWI76_RS05985: BWI76_RS05985 - branched-chain amino acid ABC transporter permease, at 1,255,492 to 1,256,541
_RS05985
Position (kb) 1254
1255
1256 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1253.798 kb on + strand, within BWI76_RS05970 at 1253.880 kb on - strand, within BWI76_RS05970 at 1254.022 kb on + strand at 1254.030 kb on - strand at 1254.030 kb on - strand at 1254.030 kb on - strand at 1254.062 kb on - strand at 1254.255 kb on - strand, within BWI76_RS05975 at 1254.403 kb on + strand, within BWI76_RS05975 at 1254.411 kb on - strand, within BWI76_RS05975 at 1254.432 kb on + strand, within BWI76_RS05975 at 1254.675 kb on + strand at 1254.794 kb on - strand at 1254.816 kb on - strand, within BWI76_RS05980 at 1254.856 kb on + strand, within BWI76_RS05980 at 1255.055 kb on - strand, within BWI76_RS05980 at 1255.099 kb on + strand, within BWI76_RS05980 at 1255.099 kb on + strand, within BWI76_RS05980 at 1255.182 kb on + strand, within BWI76_RS05980 at 1255.338 kb on - strand, within BWI76_RS05980 at 1255.352 kb on + strand at 1255.384 kb on + strand, within BWI76_RS05980 at 1255.465 kb on + strand at 1255.831 kb on + strand, within BWI76_RS05985 at 1256.049 kb on - strand, within BWI76_RS05985 at 1256.193 kb on + strand, within BWI76_RS05985 at 1256.366 kb on - strand, within BWI76_RS05985 at 1256.382 kb on - strand, within BWI76_RS05985 at 1256.441 kb on - strand at 1256.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,253,798 + BWI76_RS05970 0.29 +0.6 1,253,880 - BWI76_RS05970 0.74 +1.6 1,254,022 + -2.7 1,254,030 - -1.1 1,254,030 - -1.7 1,254,030 - -0.5 1,254,062 - -0.1 1,254,255 - BWI76_RS05975 0.32 -0.9 1,254,403 + BWI76_RS05975 0.53 -1.0 1,254,411 - BWI76_RS05975 0.54 +0.1 1,254,432 + BWI76_RS05975 0.57 -2.0 1,254,675 + +0.0 1,254,794 - -1.3 1,254,816 - BWI76_RS05980 0.12 -0.0 1,254,856 + BWI76_RS05980 0.17 +0.9 1,255,055 - BWI76_RS05980 0.42 -0.2 1,255,099 + BWI76_RS05980 0.48 +0.4 1,255,099 + BWI76_RS05980 0.48 -2.6 1,255,182 + BWI76_RS05980 0.59 +0.1 1,255,338 - BWI76_RS05980 0.79 +0.0 1,255,352 + +0.9 1,255,384 + BWI76_RS05980 0.84 -0.1 1,255,465 + -0.1 1,255,831 + BWI76_RS05985 0.32 -3.3 1,256,049 - BWI76_RS05985 0.53 -0.6 1,256,193 + BWI76_RS05985 0.67 -0.0 1,256,366 - BWI76_RS05985 0.83 -0.2 1,256,382 - BWI76_RS05985 0.85 -1.4 1,256,441 - -0.8 1,256,501 - +0.9
Or see this region's nucleotide sequence