Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05645 and BWI76_RS05650 are separated by 76 nucleotides BWI76_RS05650 and BWI76_RS05655 are separated by 583 nucleotides BWI76_RS05655 and BWI76_RS05660 are separated by 10 nucleotides
BWI76_RS05645: BWI76_RS05645 - fructuronate reductase, at 1,184,843 to 1,186,318
_RS05645
BWI76_RS05650: BWI76_RS05650 - mannonate dehydratase, at 1,186,395 to 1,187,579
_RS05650
BWI76_RS05655: BWI76_RS05655 - hypothetical protein, at 1,188,163 to 1,188,420
_RS05655
BWI76_RS05660: BWI76_RS05660 - N-acetyltransferase, at 1,188,431 to 1,188,982
_RS05660
Position (kb) 1186
1187
1188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1185.719 kb on - strand, within BWI76_RS05645 at 1185.821 kb on + strand, within BWI76_RS05645 at 1185.829 kb on - strand, within BWI76_RS05645 at 1186.333 kb on - strand at 1186.673 kb on + strand, within BWI76_RS05650 at 1186.681 kb on - strand, within BWI76_RS05650 at 1186.691 kb on - strand, within BWI76_RS05650 at 1186.701 kb on - strand, within BWI76_RS05650 at 1186.772 kb on + strand, within BWI76_RS05650 at 1187.019 kb on + strand, within BWI76_RS05650 at 1187.022 kb on - strand, within BWI76_RS05650 at 1187.044 kb on + strand, within BWI76_RS05650 at 1187.168 kb on + strand, within BWI76_RS05650 at 1187.204 kb on + strand, within BWI76_RS05650 at 1187.214 kb on - strand, within BWI76_RS05650 at 1187.290 kb on + strand, within BWI76_RS05650 at 1187.304 kb on - strand, within BWI76_RS05650 at 1187.362 kb on + strand, within BWI76_RS05650 at 1187.370 kb on - strand, within BWI76_RS05650 at 1187.552 kb on + strand at 1187.560 kb on - strand at 1187.606 kb on + strand at 1187.669 kb on - strand at 1187.778 kb on - strand at 1187.824 kb on + strand at 1187.837 kb on + strand at 1187.837 kb on + strand at 1187.845 kb on - strand at 1187.845 kb on - strand at 1187.845 kb on - strand at 1187.845 kb on - strand at 1188.010 kb on + strand at 1188.204 kb on + strand, within BWI76_RS05655 at 1188.368 kb on - strand, within BWI76_RS05655 at 1188.377 kb on - strand, within BWI76_RS05655 at 1188.494 kb on + strand, within BWI76_RS05660 at 1188.494 kb on + strand, within BWI76_RS05660
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,185,719 - BWI76_RS05645 0.59 -1.6 1,185,821 + BWI76_RS05645 0.66 +1.6 1,185,829 - BWI76_RS05645 0.67 +0.3 1,186,333 - -0.6 1,186,673 + BWI76_RS05650 0.23 +0.4 1,186,681 - BWI76_RS05650 0.24 -0.8 1,186,691 - BWI76_RS05650 0.25 +1.4 1,186,701 - BWI76_RS05650 0.26 +0.3 1,186,772 + BWI76_RS05650 0.32 +0.5 1,187,019 + BWI76_RS05650 0.53 +1.6 1,187,022 - BWI76_RS05650 0.53 +0.4 1,187,044 + BWI76_RS05650 0.55 -0.5 1,187,168 + BWI76_RS05650 0.65 +0.1 1,187,204 + BWI76_RS05650 0.68 -2.8 1,187,214 - BWI76_RS05650 0.69 +0.5 1,187,290 + BWI76_RS05650 0.76 -1.2 1,187,304 - BWI76_RS05650 0.77 +0.8 1,187,362 + BWI76_RS05650 0.82 +0.2 1,187,370 - BWI76_RS05650 0.82 -0.3 1,187,552 + +0.4 1,187,560 - -1.1 1,187,606 + +0.9 1,187,669 - -0.7 1,187,778 - +0.6 1,187,824 + -0.1 1,187,837 + +0.9 1,187,837 + -2.2 1,187,845 - -0.1 1,187,845 - -1.2 1,187,845 - +0.4 1,187,845 - +1.3 1,188,010 + +0.1 1,188,204 + BWI76_RS05655 0.16 -2.9 1,188,368 - BWI76_RS05655 0.79 +2.2 1,188,377 - BWI76_RS05655 0.83 +1.1 1,188,494 + BWI76_RS05660 0.11 +0.3 1,188,494 + BWI76_RS05660 0.11 -1.4
Or see this region's nucleotide sequence