Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04935 and BWI76_RS04940 are separated by 359 nucleotides BWI76_RS04940 and BWI76_RS04945 are separated by 146 nucleotides BWI76_RS04945 and BWI76_RS04950 are separated by 80 nucleotides
BWI76_RS04935: BWI76_RS04935 - hypothetical protein, at 1,036,146 to 1,036,472
_RS04935
BWI76_RS04940: BWI76_RS04940 - hypothetical protein, at 1,036,832 to 1,037,179
_RS04940
BWI76_RS04945: BWI76_RS04945 - multicopper oxidase, at 1,037,326 to 1,038,909
_RS04945
BWI76_RS04950: BWI76_RS04950 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 1,038,990 to 1,041,380
_RS04950
Position (kb) 1037
1038
1039 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1036.335 kb on - strand, within BWI76_RS04935 at 1036.371 kb on + strand, within BWI76_RS04935 at 1036.371 kb on + strand, within BWI76_RS04935 at 1036.371 kb on + strand, within BWI76_RS04935 at 1036.371 kb on + strand, within BWI76_RS04935 at 1036.371 kb on + strand, within BWI76_RS04935 at 1036.371 kb on + strand, within BWI76_RS04935 at 1036.371 kb on + strand, within BWI76_RS04935 at 1036.379 kb on - strand, within BWI76_RS04935 at 1036.380 kb on - strand, within BWI76_RS04935 at 1036.382 kb on + strand, within BWI76_RS04935 at 1036.392 kb on + strand, within BWI76_RS04935 at 1036.392 kb on + strand, within BWI76_RS04935 at 1036.406 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.417 kb on + strand, within BWI76_RS04935 at 1036.422 kb on + strand, within BWI76_RS04935 at 1036.422 kb on + strand, within BWI76_RS04935 at 1036.422 kb on + strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.425 kb on - strand, within BWI76_RS04935 at 1036.427 kb on - strand, within BWI76_RS04935 at 1036.427 kb on - strand, within BWI76_RS04935 at 1036.435 kb on - strand, within BWI76_RS04935 at 1036.451 kb on - strand at 1036.486 kb on + strand at 1036.494 kb on - strand at 1036.536 kb on - strand at 1036.543 kb on - strand at 1036.600 kb on + strand at 1036.789 kb on - strand at 1036.850 kb on - strand at 1036.850 kb on - strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.852 kb on + strand at 1036.857 kb on + strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.860 kb on - strand at 1036.868 kb on + strand, within BWI76_RS04940 at 1036.868 kb on + strand, within BWI76_RS04940 at 1036.868 kb on + strand, within BWI76_RS04940 at 1036.884 kb on - strand, within BWI76_RS04940 at 1036.915 kb on + strand, within BWI76_RS04940 at 1036.915 kb on + strand, within BWI76_RS04940 at 1036.918 kb on - strand, within BWI76_RS04940 at 1036.923 kb on - strand, within BWI76_RS04940 at 1036.923 kb on - strand, within BWI76_RS04940 at 1036.923 kb on - strand, within BWI76_RS04940 at 1036.923 kb on - strand, within BWI76_RS04940 at 1036.925 kb on + strand, within BWI76_RS04940 at 1036.928 kb on + strand, within BWI76_RS04940 at 1036.929 kb on + strand, within BWI76_RS04940 at 1036.937 kb on - strand, within BWI76_RS04940 at 1036.948 kb on + strand, within BWI76_RS04940 at 1037.022 kb on + strand, within BWI76_RS04940 at 1037.040 kb on - strand, within BWI76_RS04940 at 1037.043 kb on + strand, within BWI76_RS04940 at 1037.071 kb on - strand, within BWI76_RS04940 at 1037.085 kb on + strand, within BWI76_RS04940 at 1037.113 kb on + strand, within BWI76_RS04940 at 1037.115 kb on + strand, within BWI76_RS04940 at 1037.128 kb on - strand, within BWI76_RS04940 at 1037.152 kb on + strand at 1037.196 kb on - strand at 1037.209 kb on + strand at 1037.209 kb on - strand at 1037.214 kb on + strand at 1037.222 kb on + strand at 1037.222 kb on + strand at 1037.222 kb on + strand at 1037.222 kb on + strand at 1037.222 kb on + strand at 1037.222 kb on + strand at 1037.222 kb on + strand at 1037.222 kb on - strand at 1037.227 kb on + strand at 1037.230 kb on - strand at 1037.230 kb on - strand at 1037.230 kb on - strand at 1037.230 kb on - strand at 1037.230 kb on - strand at 1037.230 kb on - strand at 1037.289 kb on - strand at 1037.383 kb on + strand at 1037.386 kb on + strand at 1037.523 kb on - strand, within BWI76_RS04945 at 1037.562 kb on - strand, within BWI76_RS04945 at 1037.620 kb on + strand, within BWI76_RS04945 at 1037.635 kb on + strand, within BWI76_RS04945 at 1037.644 kb on - strand, within BWI76_RS04945 at 1037.644 kb on - strand, within BWI76_RS04945 at 1037.716 kb on - strand, within BWI76_RS04945 at 1037.910 kb on + strand, within BWI76_RS04945 at 1037.973 kb on - strand, within BWI76_RS04945 at 1038.283 kb on + strand, within BWI76_RS04945 at 1038.350 kb on + strand, within BWI76_RS04945 at 1038.540 kb on + strand, within BWI76_RS04945 at 1038.548 kb on - strand, within BWI76_RS04945 at 1038.650 kb on - strand, within BWI76_RS04945 at 1039.097 kb on + strand at 1039.258 kb on + strand, within BWI76_RS04950 at 1039.310 kb on - strand, within BWI76_RS04950 at 1039.373 kb on - strand, within BWI76_RS04950 at 1039.639 kb on + strand, within BWI76_RS04950
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,036,335 - BWI76_RS04935 0.58 -2.2 1,036,371 + BWI76_RS04935 0.69 -0.4 1,036,371 + BWI76_RS04935 0.69 -0.1 1,036,371 + BWI76_RS04935 0.69 +1.6 1,036,371 + BWI76_RS04935 0.69 +0.6 1,036,371 + BWI76_RS04935 0.69 -1.3 1,036,371 + BWI76_RS04935 0.69 +0.6 1,036,371 + BWI76_RS04935 0.69 +1.0 1,036,379 - BWI76_RS04935 0.71 -1.0 1,036,380 - BWI76_RS04935 0.72 +1.4 1,036,382 + BWI76_RS04935 0.72 -0.2 1,036,392 + BWI76_RS04935 0.75 -1.3 1,036,392 + BWI76_RS04935 0.75 -1.8 1,036,406 + BWI76_RS04935 0.80 -0.2 1,036,417 + BWI76_RS04935 0.83 -1.8 1,036,417 + BWI76_RS04935 0.83 -0.0 1,036,417 + BWI76_RS04935 0.83 -1.3 1,036,417 + BWI76_RS04935 0.83 -0.1 1,036,417 + BWI76_RS04935 0.83 -0.0 1,036,417 + BWI76_RS04935 0.83 -0.6 1,036,417 + BWI76_RS04935 0.83 +1.0 1,036,417 + BWI76_RS04935 0.83 +0.3 1,036,417 + BWI76_RS04935 0.83 -2.2 1,036,417 + BWI76_RS04935 0.83 +1.0 1,036,417 + BWI76_RS04935 0.83 -2.0 1,036,417 + BWI76_RS04935 0.83 -0.6 1,036,422 + BWI76_RS04935 0.84 -1.8 1,036,422 + BWI76_RS04935 0.84 -2.6 1,036,422 + BWI76_RS04935 0.84 -0.7 1,036,425 - BWI76_RS04935 0.85 +1.0 1,036,425 - BWI76_RS04935 0.85 -1.3 1,036,425 - BWI76_RS04935 0.85 +3.8 1,036,425 - BWI76_RS04935 0.85 -2.2 1,036,425 - BWI76_RS04935 0.85 -1.7 1,036,425 - BWI76_RS04935 0.85 -2.2 1,036,425 - BWI76_RS04935 0.85 -0.0 1,036,425 - BWI76_RS04935 0.85 -0.0 1,036,425 - BWI76_RS04935 0.85 -1.8 1,036,425 - BWI76_RS04935 0.85 -0.6 1,036,427 - BWI76_RS04935 0.86 +1.0 1,036,427 - BWI76_RS04935 0.86 -0.0 1,036,435 - BWI76_RS04935 0.88 -0.6 1,036,451 - -1.6 1,036,486 + -1.8 1,036,494 - -0.6 1,036,536 - -1.0 1,036,543 - -1.8 1,036,600 + +1.0 1,036,789 - -0.0 1,036,850 - -3.4 1,036,850 - -0.4 1,036,852 + -1.8 1,036,852 + +1.0 1,036,852 + +1.0 1,036,852 + -0.3 1,036,852 + +0.1 1,036,852 + +0.4 1,036,852 + -0.5 1,036,852 + +1.0 1,036,852 + -0.7 1,036,852 + +1.2 1,036,852 + -2.0 1,036,852 + +0.2 1,036,852 + +0.2 1,036,852 + +0.4 1,036,857 + -1.7 1,036,860 - +1.0 1,036,860 - +0.0 1,036,860 - +1.3 1,036,860 - +1.4 1,036,860 - -1.4 1,036,860 - -3.3 1,036,860 - -2.5 1,036,860 - -1.0 1,036,860 - -0.0 1,036,860 - -0.1 1,036,860 - -0.1 1,036,860 - +1.7 1,036,860 - -2.9 1,036,860 - +1.1 1,036,860 - +1.1 1,036,860 - -0.6 1,036,868 + BWI76_RS04940 0.10 +1.0 1,036,868 + BWI76_RS04940 0.10 -0.9 1,036,868 + BWI76_RS04940 0.10 +0.4 1,036,884 - BWI76_RS04940 0.15 -1.6 1,036,915 + BWI76_RS04940 0.24 -1.4 1,036,915 + BWI76_RS04940 0.24 -0.4 1,036,918 - BWI76_RS04940 0.25 -2.5 1,036,923 - BWI76_RS04940 0.26 -0.8 1,036,923 - BWI76_RS04940 0.26 +1.9 1,036,923 - BWI76_RS04940 0.26 -0.1 1,036,923 - BWI76_RS04940 0.26 -1.0 1,036,925 + BWI76_RS04940 0.27 +1.0 1,036,928 + BWI76_RS04940 0.28 +0.4 1,036,929 + BWI76_RS04940 0.28 +1.0 1,036,937 - BWI76_RS04940 0.30 -1.0 1,036,948 + BWI76_RS04940 0.33 -0.0 1,037,022 + BWI76_RS04940 0.55 +0.4 1,037,040 - BWI76_RS04940 0.60 +1.4 1,037,043 + BWI76_RS04940 0.61 -0.0 1,037,071 - BWI76_RS04940 0.69 +1.1 1,037,085 + BWI76_RS04940 0.73 -0.7 1,037,113 + BWI76_RS04940 0.81 -0.2 1,037,115 + BWI76_RS04940 0.81 +0.8 1,037,128 - BWI76_RS04940 0.85 -1.0 1,037,152 + -1.6 1,037,196 - -0.0 1,037,209 + +0.5 1,037,209 - -1.4 1,037,214 + -1.0 1,037,222 + +0.2 1,037,222 + +0.6 1,037,222 + -1.6 1,037,222 + -0.3 1,037,222 + -1.4 1,037,222 + -0.9 1,037,222 + +0.6 1,037,222 - -2.0 1,037,227 + +0.4 1,037,230 - +2.8 1,037,230 - -1.6 1,037,230 - -0.4 1,037,230 - -0.3 1,037,230 - -3.4 1,037,230 - -0.6 1,037,289 - -2.7 1,037,383 + -0.8 1,037,386 + -1.0 1,037,523 - BWI76_RS04945 0.12 -0.2 1,037,562 - BWI76_RS04945 0.15 +0.8 1,037,620 + BWI76_RS04945 0.19 +1.1 1,037,635 + BWI76_RS04945 0.20 -1.7 1,037,644 - BWI76_RS04945 0.20 -1.0 1,037,644 - BWI76_RS04945 0.20 +0.1 1,037,716 - BWI76_RS04945 0.25 -0.1 1,037,910 + BWI76_RS04945 0.37 +0.5 1,037,973 - BWI76_RS04945 0.41 +1.4 1,038,283 + BWI76_RS04945 0.60 -0.0 1,038,350 + BWI76_RS04945 0.65 -0.4 1,038,540 + BWI76_RS04945 0.77 -0.4 1,038,548 - BWI76_RS04945 0.77 -0.8 1,038,650 - BWI76_RS04945 0.84 +1.6 1,039,097 + -0.6 1,039,258 + BWI76_RS04950 0.11 -0.5 1,039,310 - BWI76_RS04950 0.13 -3.5 1,039,373 - BWI76_RS04950 0.16 +0.5 1,039,639 + BWI76_RS04950 0.27 +0.3
Or see this region's nucleotide sequence