Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18775 and PFLU_RS18780 are separated by 42 nucleotides PFLU_RS18780 and PFLU_RS18785 are separated by 12 nucleotides PFLU_RS18785 and PFLU_RS18790 are separated by 3 nucleotides
PFLU_RS18775: PFLU_RS18775 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,245,171 to 4,246,415
_RS18775
PFLU_RS18780: PFLU_RS18780 - NAD(P)-binding protein, at 4,246,458 to 4,247,852
_RS18780
PFLU_RS18785: PFLU_RS18785 - ABC transporter ATP-binding protein, at 4,247,865 to 4,248,632
_RS18785
PFLU_RS18790: PFLU_RS18790 - ABC transporter substrate-binding protein, at 4,248,636 to 4,249,976
_RS18790
Position (kb) 4246
4247
4248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4245.804 kb on + strand, within PFLU_RS18775 at 4245.804 kb on + strand, within PFLU_RS18775 at 4245.805 kb on - strand, within PFLU_RS18775 at 4245.805 kb on - strand, within PFLU_RS18775 at 4245.805 kb on - strand, within PFLU_RS18775 at 4246.236 kb on + strand, within PFLU_RS18775 at 4246.236 kb on + strand, within PFLU_RS18775 at 4246.236 kb on + strand, within PFLU_RS18775 at 4246.236 kb on + strand, within PFLU_RS18775 at 4246.237 kb on - strand, within PFLU_RS18775 at 4246.237 kb on - strand, within PFLU_RS18775 at 4246.237 kb on - strand, within PFLU_RS18775 at 4246.299 kb on + strand at 4246.299 kb on + strand at 4246.385 kb on + strand at 4246.386 kb on - strand at 4246.386 kb on - strand at 4246.503 kb on + strand at 4246.503 kb on + strand at 4246.503 kb on + strand at 4246.503 kb on + strand at 4246.504 kb on - strand at 4246.504 kb on - strand at 4246.504 kb on - strand at 4246.504 kb on - strand at 4246.504 kb on - strand at 4246.504 kb on - strand at 4246.520 kb on + strand at 4246.520 kb on + strand at 4246.521 kb on - strand at 4246.705 kb on + strand, within PFLU_RS18780 at 4246.705 kb on + strand, within PFLU_RS18780 at 4246.971 kb on + strand, within PFLU_RS18780 at 4246.971 kb on + strand, within PFLU_RS18780 at 4247.218 kb on - strand, within PFLU_RS18780 at 4247.218 kb on - strand, within PFLU_RS18780 at 4247.218 kb on - strand, within PFLU_RS18780 at 4247.562 kb on + strand, within PFLU_RS18780 at 4247.562 kb on + strand, within PFLU_RS18780 at 4247.704 kb on + strand, within PFLU_RS18780 at 4247.704 kb on + strand, within PFLU_RS18780 at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.823 kb on + strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.824 kb on - strand at 4247.866 kb on + strand at 4247.867 kb on - strand at 4247.881 kb on + strand at 4247.881 kb on + strand at 4247.882 kb on - strand at 4247.882 kb on - strand at 4247.882 kb on - strand at 4247.955 kb on + strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.956 kb on - strand, within PFLU_RS18785 at 4247.959 kb on + strand, within PFLU_RS18785 at 4247.959 kb on + strand, within PFLU_RS18785 at 4247.959 kb on + strand, within PFLU_RS18785 at 4247.959 kb on + strand, within PFLU_RS18785 at 4247.960 kb on - strand, within PFLU_RS18785 at 4247.960 kb on - strand, within PFLU_RS18785 at 4247.960 kb on - strand, within PFLU_RS18785 at 4247.960 kb on - strand, within PFLU_RS18785 at 4247.974 kb on + strand, within PFLU_RS18785 at 4247.974 kb on + strand, within PFLU_RS18785 at 4247.974 kb on + strand, within PFLU_RS18785 at 4247.974 kb on + strand, within PFLU_RS18785 at 4247.974 kb on + strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4247.975 kb on - strand, within PFLU_RS18785 at 4248.074 kb on + strand, within PFLU_RS18785 at 4248.074 kb on + strand, within PFLU_RS18785 at 4248.075 kb on - strand, within PFLU_RS18785 at 4248.116 kb on + strand, within PFLU_RS18785 at 4248.223 kb on + strand, within PFLU_RS18785 at 4248.223 kb on + strand, within PFLU_RS18785 at 4248.223 kb on + strand, within PFLU_RS18785 at 4248.223 kb on + strand, within PFLU_RS18785 at 4248.223 kb on + strand, within PFLU_RS18785 at 4248.223 kb on + strand, within PFLU_RS18785 at 4248.224 kb on - strand, within PFLU_RS18785 at 4248.224 kb on - strand, within PFLU_RS18785 at 4248.224 kb on - strand, within PFLU_RS18785 at 4248.400 kb on + strand, within PFLU_RS18785 at 4248.401 kb on - strand, within PFLU_RS18785 at 4248.565 kb on + strand at 4248.565 kb on + strand at 4248.565 kb on + strand at 4248.579 kb on - strand at 4248.637 kb on + strand at 4248.656 kb on + strand at 4248.656 kb on + strand at 4248.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS remove 4,245,804 + PFLU_RS18775 0.51 +0.1 4,245,804 + PFLU_RS18775 0.51 -0.1 4,245,805 - PFLU_RS18775 0.51 -2.3 4,245,805 - PFLU_RS18775 0.51 +0.1 4,245,805 - PFLU_RS18775 0.51 +0.9 4,246,236 + PFLU_RS18775 0.86 +0.3 4,246,236 + PFLU_RS18775 0.86 +0.5 4,246,236 + PFLU_RS18775 0.86 -0.7 4,246,236 + PFLU_RS18775 0.86 +0.1 4,246,237 - PFLU_RS18775 0.86 -0.4 4,246,237 - PFLU_RS18775 0.86 +1.2 4,246,237 - PFLU_RS18775 0.86 -0.8 4,246,299 + +2.3 4,246,299 + +0.3 4,246,385 + +0.9 4,246,386 - -0.2 4,246,386 - -0.3 4,246,503 + -1.1 4,246,503 + -1.8 4,246,503 + +0.7 4,246,503 + +0.4 4,246,504 - -0.9 4,246,504 - +2.2 4,246,504 - +1.3 4,246,504 - -0.9 4,246,504 - -1.8 4,246,504 - +1.1 4,246,520 + +0.3 4,246,520 + +1.2 4,246,521 - -1.1 4,246,705 + PFLU_RS18780 0.18 -0.0 4,246,705 + PFLU_RS18780 0.18 -1.3 4,246,971 + PFLU_RS18780 0.37 -1.0 4,246,971 + PFLU_RS18780 0.37 +0.1 4,247,218 - PFLU_RS18780 0.54 +1.1 4,247,218 - PFLU_RS18780 0.54 +0.9 4,247,218 - PFLU_RS18780 0.54 -0.3 4,247,562 + PFLU_RS18780 0.79 +1.7 4,247,562 + PFLU_RS18780 0.79 +0.7 4,247,704 + PFLU_RS18780 0.89 -1.4 4,247,704 + PFLU_RS18780 0.89 +1.2 4,247,823 + -1.3 4,247,823 + +0.5 4,247,823 + -0.2 4,247,823 + -0.4 4,247,823 + -1.5 4,247,823 + -2.9 4,247,823 + +0.1 4,247,823 + +0.1 4,247,823 + -0.8 4,247,823 + -1.6 4,247,823 + -0.7 4,247,823 + +0.5 4,247,823 + +1.4 4,247,824 - +0.7 4,247,824 - +0.7 4,247,824 - -1.5 4,247,824 - -0.6 4,247,824 - +1.5 4,247,824 - +1.7 4,247,824 - -0.9 4,247,824 - +0.6 4,247,824 - +0.2 4,247,824 - +0.1 4,247,824 - +1.1 4,247,866 + +0.7 4,247,867 - +0.5 4,247,881 + +0.1 4,247,881 + -0.8 4,247,882 - -0.9 4,247,882 - +1.0 4,247,882 - +2.0 4,247,955 + PFLU_RS18785 0.12 -0.6 4,247,956 - PFLU_RS18785 0.12 -0.5 4,247,956 - PFLU_RS18785 0.12 +0.7 4,247,956 - PFLU_RS18785 0.12 -1.5 4,247,956 - PFLU_RS18785 0.12 +1.5 4,247,956 - PFLU_RS18785 0.12 +0.3 4,247,956 - PFLU_RS18785 0.12 -1.8 4,247,956 - PFLU_RS18785 0.12 +0.1 4,247,956 - PFLU_RS18785 0.12 -0.3 4,247,956 - PFLU_RS18785 0.12 +2.5 4,247,956 - PFLU_RS18785 0.12 +0.9 4,247,959 + PFLU_RS18785 0.12 -0.3 4,247,959 + PFLU_RS18785 0.12 +0.1 4,247,959 + PFLU_RS18785 0.12 -0.1 4,247,959 + PFLU_RS18785 0.12 +0.3 4,247,960 - PFLU_RS18785 0.12 -1.2 4,247,960 - PFLU_RS18785 0.12 -1.8 4,247,960 - PFLU_RS18785 0.12 +1.2 4,247,960 - PFLU_RS18785 0.12 -1.5 4,247,974 + PFLU_RS18785 0.14 +0.1 4,247,974 + PFLU_RS18785 0.14 -0.9 4,247,974 + PFLU_RS18785 0.14 -0.0 4,247,974 + PFLU_RS18785 0.14 -1.5 4,247,974 + PFLU_RS18785 0.14 -0.4 4,247,975 - PFLU_RS18785 0.14 -0.7 4,247,975 - PFLU_RS18785 0.14 +0.7 4,247,975 - PFLU_RS18785 0.14 +0.8 4,247,975 - PFLU_RS18785 0.14 +0.4 4,247,975 - PFLU_RS18785 0.14 +0.7 4,247,975 - PFLU_RS18785 0.14 +0.8 4,247,975 - PFLU_RS18785 0.14 -0.3 4,247,975 - PFLU_RS18785 0.14 -0.6 4,247,975 - PFLU_RS18785 0.14 -0.3 4,247,975 - PFLU_RS18785 0.14 -0.5 4,248,074 + PFLU_RS18785 0.27 +0.4 4,248,074 + PFLU_RS18785 0.27 +0.3 4,248,075 - PFLU_RS18785 0.27 +0.3 4,248,116 + PFLU_RS18785 0.33 -0.9 4,248,223 + PFLU_RS18785 0.47 -2.3 4,248,223 + PFLU_RS18785 0.47 -1.0 4,248,223 + PFLU_RS18785 0.47 +2.7 4,248,223 + PFLU_RS18785 0.47 +1.4 4,248,223 + PFLU_RS18785 0.47 -0.2 4,248,223 + PFLU_RS18785 0.47 -1.1 4,248,224 - PFLU_RS18785 0.47 +0.1 4,248,224 - PFLU_RS18785 0.47 -0.3 4,248,224 - PFLU_RS18785 0.47 +2.2 4,248,400 + PFLU_RS18785 0.70 -0.9 4,248,401 - PFLU_RS18785 0.70 -1.1 4,248,565 + +0.1 4,248,565 + +0.1 4,248,565 + +0.2 4,248,579 - -1.6 4,248,637 + +0.2 4,248,656 + -1.0 4,248,656 + +0.7 4,248,657 - +1.7
Or see this region's nucleotide sequence