Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23165 and HSERO_RS23170 overlap by 4 nucleotides HSERO_RS23170 and HSERO_RS23175 overlap by 16 nucleotides
HSERO_RS23165: HSERO_RS23165 - MFS transporter, at 5,315,275 to 5,316,486
_RS23165
HSERO_RS23170: HSERO_RS23170 - ATPase AAA, at 5,316,483 to 5,317,829
_RS23170
HSERO_RS23175: HSERO_RS23175 - histidine kinase, at 5,317,814 to 5,319,172
_RS23175
Position (kb) 5316
5317
5318 Strain fitness (log2 ratio) -1
0
1
2 at 5315.496 kb on + strand, within HSERO_RS23165 at 5315.642 kb on - strand, within HSERO_RS23165 at 5315.707 kb on - strand, within HSERO_RS23165 at 5315.758 kb on + strand, within HSERO_RS23165 at 5315.802 kb on - strand, within HSERO_RS23165 at 5315.970 kb on + strand, within HSERO_RS23165 at 5316.031 kb on - strand, within HSERO_RS23165 at 5316.149 kb on + strand, within HSERO_RS23165 at 5316.159 kb on + strand, within HSERO_RS23165 at 5316.386 kb on - strand at 5316.400 kb on + strand at 5316.731 kb on + strand, within HSERO_RS23170 at 5316.731 kb on + strand, within HSERO_RS23170 at 5316.739 kb on - strand, within HSERO_RS23170 at 5316.969 kb on + strand, within HSERO_RS23170 at 5317.087 kb on + strand, within HSERO_RS23170 at 5317.095 kb on - strand, within HSERO_RS23170 at 5317.206 kb on - strand, within HSERO_RS23170 at 5317.206 kb on - strand, within HSERO_RS23170 at 5317.206 kb on - strand, within HSERO_RS23170 at 5317.592 kb on - strand, within HSERO_RS23170 at 5317.771 kb on + strand at 5318.029 kb on + strand, within HSERO_RS23175 at 5318.096 kb on + strand, within HSERO_RS23175 at 5318.111 kb on - strand, within HSERO_RS23175 at 5318.142 kb on - strand, within HSERO_RS23175 at 5318.142 kb on - strand, within HSERO_RS23175 at 5318.142 kb on - strand, within HSERO_RS23175 at 5318.142 kb on - strand, within HSERO_RS23175 at 5318.346 kb on - strand, within HSERO_RS23175 at 5318.391 kb on + strand, within HSERO_RS23175 at 5318.438 kb on - strand, within HSERO_RS23175 at 5318.522 kb on - strand, within HSERO_RS23175 at 5318.539 kb on + strand, within HSERO_RS23175 at 5318.552 kb on - strand, within HSERO_RS23175 at 5318.579 kb on + strand, within HSERO_RS23175
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 5,315,496 + HSERO_RS23165 0.18 -0.1 5,315,642 - HSERO_RS23165 0.30 +1.3 5,315,707 - HSERO_RS23165 0.36 -0.1 5,315,758 + HSERO_RS23165 0.40 -0.4 5,315,802 - HSERO_RS23165 0.43 -0.0 5,315,970 + HSERO_RS23165 0.57 -0.1 5,316,031 - HSERO_RS23165 0.62 -0.3 5,316,149 + HSERO_RS23165 0.72 +1.6 5,316,159 + HSERO_RS23165 0.73 +1.5 5,316,386 - +0.5 5,316,400 + -0.0 5,316,731 + HSERO_RS23170 0.18 +0.2 5,316,731 + HSERO_RS23170 0.18 +0.5 5,316,739 - HSERO_RS23170 0.19 +1.3 5,316,969 + HSERO_RS23170 0.36 +1.8 5,317,087 + HSERO_RS23170 0.45 +0.1 5,317,095 - HSERO_RS23170 0.45 +0.4 5,317,206 - HSERO_RS23170 0.54 +0.7 5,317,206 - HSERO_RS23170 0.54 -0.2 5,317,206 - HSERO_RS23170 0.54 +0.3 5,317,592 - HSERO_RS23170 0.82 +0.5 5,317,771 + +0.3 5,318,029 + HSERO_RS23175 0.16 +0.5 5,318,096 + HSERO_RS23175 0.21 -1.1 5,318,111 - HSERO_RS23175 0.22 -0.3 5,318,142 - HSERO_RS23175 0.24 -0.5 5,318,142 - HSERO_RS23175 0.24 -0.2 5,318,142 - HSERO_RS23175 0.24 -0.4 5,318,142 - HSERO_RS23175 0.24 -0.2 5,318,346 - HSERO_RS23175 0.39 -0.5 5,318,391 + HSERO_RS23175 0.42 +0.8 5,318,438 - HSERO_RS23175 0.46 -0.5 5,318,522 - HSERO_RS23175 0.52 -0.2 5,318,539 + HSERO_RS23175 0.53 +0.1 5,318,552 - HSERO_RS23175 0.54 -0.0 5,318,579 + HSERO_RS23175 0.56 +1.9
Or see this region's nucleotide sequence