Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23105 and HSERO_RS23110 are separated by 67 nucleotides HSERO_RS23110 and HSERO_RS23115 are separated by 92 nucleotides HSERO_RS23115 and HSERO_RS23120 are separated by 21 nucleotides HSERO_RS23120 and HSERO_RS23125 are separated by 186 nucleotides
HSERO_RS23105: HSERO_RS23105 - hypothetical protein, at 5,305,941 to 5,306,870
_RS23105
HSERO_RS23110: HSERO_RS23110 - cytochrome C, at 5,306,938 to 5,307,255
_RS23110
HSERO_RS23115: HSERO_RS23115 - membrane protein, at 5,307,348 to 5,308,145
_RS23115
HSERO_RS23120: HSERO_RS23120 - hypothetical protein, at 5,308,167 to 5,308,577
_RS23120
HSERO_RS23125: HSERO_RS23125 - transcriptional regulator, at 5,308,764 to 5,309,507
_RS23125
Position (kb) 5307
5308
5309 Strain fitness (log2 ratio) -1
0
1
2 at 5306.364 kb on + strand, within HSERO_RS23105 at 5306.376 kb on + strand, within HSERO_RS23105 at 5306.384 kb on - strand, within HSERO_RS23105 at 5306.384 kb on - strand, within HSERO_RS23105 at 5306.399 kb on + strand, within HSERO_RS23105 at 5306.428 kb on - strand, within HSERO_RS23105 at 5306.428 kb on - strand, within HSERO_RS23105 at 5306.494 kb on - strand, within HSERO_RS23105 at 5306.596 kb on - strand, within HSERO_RS23105 at 5306.694 kb on - strand, within HSERO_RS23105 at 5306.710 kb on - strand, within HSERO_RS23105 at 5306.798 kb on + strand at 5306.806 kb on - strand at 5306.861 kb on + strand at 5306.924 kb on + strand at 5307.187 kb on + strand, within HSERO_RS23110 at 5307.279 kb on + strand at 5307.542 kb on + strand, within HSERO_RS23115 at 5307.608 kb on + strand, within HSERO_RS23115 at 5307.658 kb on - strand, within HSERO_RS23115 at 5307.752 kb on + strand, within HSERO_RS23115 at 5307.800 kb on - strand, within HSERO_RS23115 at 5307.820 kb on - strand, within HSERO_RS23115 at 5307.822 kb on + strand, within HSERO_RS23115 at 5307.869 kb on - strand, within HSERO_RS23115 at 5308.087 kb on + strand at 5308.097 kb on + strand at 5308.107 kb on + strand at 5308.200 kb on + strand at 5308.200 kb on + strand at 5308.311 kb on + strand, within HSERO_RS23120 at 5308.332 kb on - strand, within HSERO_RS23120 at 5308.513 kb on + strand, within HSERO_RS23120 at 5308.562 kb on + strand at 5308.767 kb on + strand at 5308.825 kb on + strand at 5308.833 kb on - strand at 5308.838 kb on + strand at 5308.894 kb on + strand, within HSERO_RS23125 at 5308.914 kb on + strand, within HSERO_RS23125 at 5308.919 kb on + strand, within HSERO_RS23125 at 5308.922 kb on - strand, within HSERO_RS23125 at 5308.922 kb on - strand, within HSERO_RS23125 at 5309.053 kb on + strand, within HSERO_RS23125 at 5309.059 kb on + strand, within HSERO_RS23125
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 5,306,364 + HSERO_RS23105 0.45 -0.9 5,306,376 + HSERO_RS23105 0.47 -0.7 5,306,384 - HSERO_RS23105 0.48 +0.0 5,306,384 - HSERO_RS23105 0.48 +0.9 5,306,399 + HSERO_RS23105 0.49 +0.1 5,306,428 - HSERO_RS23105 0.52 -0.1 5,306,428 - HSERO_RS23105 0.52 +0.9 5,306,494 - HSERO_RS23105 0.59 -0.0 5,306,596 - HSERO_RS23105 0.70 +0.4 5,306,694 - HSERO_RS23105 0.81 +0.6 5,306,710 - HSERO_RS23105 0.83 +0.3 5,306,798 + +0.1 5,306,806 - -0.0 5,306,861 + +0.7 5,306,924 + -0.1 5,307,187 + HSERO_RS23110 0.78 +0.1 5,307,279 + +0.2 5,307,542 + HSERO_RS23115 0.24 +0.2 5,307,608 + HSERO_RS23115 0.33 -1.3 5,307,658 - HSERO_RS23115 0.39 +1.5 5,307,752 + HSERO_RS23115 0.51 +1.5 5,307,800 - HSERO_RS23115 0.57 +0.1 5,307,820 - HSERO_RS23115 0.59 +0.4 5,307,822 + HSERO_RS23115 0.59 +2.0 5,307,869 - HSERO_RS23115 0.65 +0.9 5,308,087 + -0.5 5,308,097 + -0.7 5,308,107 + -0.1 5,308,200 + -0.4 5,308,200 + +0.1 5,308,311 + HSERO_RS23120 0.35 +0.6 5,308,332 - HSERO_RS23120 0.40 -0.1 5,308,513 + HSERO_RS23120 0.84 +0.5 5,308,562 + +0.8 5,308,767 + -0.1 5,308,825 + +0.0 5,308,833 - +0.2 5,308,838 + -0.2 5,308,894 + HSERO_RS23125 0.17 +1.2 5,308,914 + HSERO_RS23125 0.20 +1.6 5,308,919 + HSERO_RS23125 0.21 +0.1 5,308,922 - HSERO_RS23125 0.21 +0.5 5,308,922 - HSERO_RS23125 0.21 +0.7 5,309,053 + HSERO_RS23125 0.39 +0.8 5,309,059 + HSERO_RS23125 0.40 -1.0
Or see this region's nucleotide sequence