Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18345 and HSERO_RS18350 are separated by 94 nucleotides HSERO_RS18350 and HSERO_RS18355 are separated by 310 nucleotides HSERO_RS18355 and HSERO_RS18360 overlap by 4 nucleotides
HSERO_RS18345: HSERO_RS18345 - ABC transporter substrate-binding protein, at 4,209,975 to 4,211,012
_RS18345
HSERO_RS18350: HSERO_RS18350 - CoA transferase, at 4,211,107 to 4,212,354
_RS18350
HSERO_RS18355: HSERO_RS18355 - recombinase RecR, at 4,212,665 to 4,213,261
_RS18355
HSERO_RS18360: HSERO_RS18360 - hypothetical protein, at 4,213,258 to 4,213,560
_RS18360
Position (kb) 4211
4212
4213 Strain fitness (log2 ratio) -1
0
1 at 4210.146 kb on - strand, within HSERO_RS18345 at 4210.366 kb on - strand, within HSERO_RS18345 at 4210.401 kb on - strand, within HSERO_RS18345 at 4210.446 kb on + strand, within HSERO_RS18345 at 4210.473 kb on - strand, within HSERO_RS18345 at 4210.528 kb on + strand, within HSERO_RS18345 at 4210.538 kb on + strand at 4210.538 kb on + strand, within HSERO_RS18345 at 4210.546 kb on - strand at 4210.546 kb on - strand, within HSERO_RS18345 at 4210.546 kb on - strand, within HSERO_RS18345 at 4210.672 kb on - strand, within HSERO_RS18345 at 4210.867 kb on + strand, within HSERO_RS18345 at 4211.086 kb on + strand at 4211.112 kb on - strand at 4211.112 kb on - strand at 4211.132 kb on + strand at 4211.140 kb on - strand at 4211.246 kb on + strand, within HSERO_RS18350 at 4211.563 kb on + strand, within HSERO_RS18350 at 4211.590 kb on - strand, within HSERO_RS18350 at 4211.621 kb on - strand, within HSERO_RS18350 at 4211.703 kb on - strand, within HSERO_RS18350 at 4212.156 kb on - strand, within HSERO_RS18350 at 4212.235 kb on + strand at 4212.680 kb on + strand at 4212.915 kb on - strand, within HSERO_RS18355 at 4212.970 kb on + strand, within HSERO_RS18355 at 4212.989 kb on - strand, within HSERO_RS18355 at 4213.077 kb on + strand, within HSERO_RS18355 at 4213.085 kb on - strand, within HSERO_RS18355 at 4213.085 kb on - strand, within HSERO_RS18355 at 4213.176 kb on + strand, within HSERO_RS18355 at 4213.184 kb on - strand, within HSERO_RS18355
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 4,210,146 - HSERO_RS18345 0.16 +0.2 4,210,366 - HSERO_RS18345 0.38 +0.3 4,210,401 - HSERO_RS18345 0.41 -0.6 4,210,446 + HSERO_RS18345 0.45 +1.1 4,210,473 - HSERO_RS18345 0.48 +0.1 4,210,528 + HSERO_RS18345 0.53 -0.7 4,210,538 + +0.7 4,210,538 + HSERO_RS18345 0.54 -0.7 4,210,546 - +1.0 4,210,546 - HSERO_RS18345 0.55 +0.3 4,210,546 - HSERO_RS18345 0.55 +0.1 4,210,672 - HSERO_RS18345 0.67 -0.7 4,210,867 + HSERO_RS18345 0.86 -0.1 4,211,086 + -0.3 4,211,112 - +0.0 4,211,112 - +0.6 4,211,132 + -0.2 4,211,140 - +0.3 4,211,246 + HSERO_RS18350 0.11 +0.2 4,211,563 + HSERO_RS18350 0.37 +0.5 4,211,590 - HSERO_RS18350 0.39 +0.2 4,211,621 - HSERO_RS18350 0.41 +0.5 4,211,703 - HSERO_RS18350 0.48 -0.2 4,212,156 - HSERO_RS18350 0.84 +0.9 4,212,235 + +0.4 4,212,680 + +0.5 4,212,915 - HSERO_RS18355 0.42 +0.3 4,212,970 + HSERO_RS18355 0.51 -0.4 4,212,989 - HSERO_RS18355 0.54 -0.2 4,213,077 + HSERO_RS18355 0.69 -0.1 4,213,085 - HSERO_RS18355 0.70 -0.4 4,213,085 - HSERO_RS18355 0.70 -0.1 4,213,176 + HSERO_RS18355 0.86 +0.4 4,213,184 - HSERO_RS18355 0.87 +0.0
Or see this region's nucleotide sequence