Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14300

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14295 and HSERO_RS14300 are separated by 168 nucleotidesHSERO_RS14300 and HSERO_RS14305 are separated by 528 nucleotides HSERO_RS14295: HSERO_RS14295 - nitrogenase molybdenum-iron protein alpha chain, at 3,244,685 to 3,246,139 _RS14295 HSERO_RS14300: HSERO_RS14300 - nitrogenase iron protein, at 3,246,308 to 3,247,186 _RS14300 HSERO_RS14305: HSERO_RS14305 - chemotaxis protein CheY, at 3,247,715 to 3,248,146 _RS14305 Position (kb) 3246 3247 3248Strain fitness (log2 ratio) -1 0 1at 3245.581 kb on - strand, within HSERO_RS14295at 3245.706 kb on + strand, within HSERO_RS14295at 3245.798 kb on - strand, within HSERO_RS14295at 3245.872 kb on - strand, within HSERO_RS14295at 3246.022 kb on + strandat 3246.022 kb on + strandat 3246.030 kb on - strandat 3246.505 kb on + strand, within HSERO_RS14300at 3246.537 kb on + strandat 3246.555 kb on + strand, within HSERO_RS14300at 3246.800 kb on + strand, within HSERO_RS14300at 3246.896 kb on - strand, within HSERO_RS14300at 3247.024 kb on - strand, within HSERO_RS14300at 3247.209 kb on + strandat 3247.348 kb on - strandat 3247.659 kb on + strandat 3247.868 kb on + strand, within HSERO_RS14305at 3247.906 kb on + strand, within HSERO_RS14305at 3248.111 kb on + strandat 3248.183 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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3,245,581 - HSERO_RS14295 0.62 +0.1
3,245,706 + HSERO_RS14295 0.70 -0.2
3,245,798 - HSERO_RS14295 0.76 +0.2
3,245,872 - HSERO_RS14295 0.82 +0.4
3,246,022 + -0.2
3,246,022 + -0.4
3,246,030 - -0.1
3,246,505 + HSERO_RS14300 0.22 +1.3
3,246,537 + +1.0
3,246,555 + HSERO_RS14300 0.28 +0.3
3,246,800 + HSERO_RS14300 0.56 +0.5
3,246,896 - HSERO_RS14300 0.67 +0.8
3,247,024 - HSERO_RS14300 0.81 +0.0
3,247,209 + +0.4
3,247,348 - -0.5
3,247,659 + -0.8
3,247,868 + HSERO_RS14305 0.35 +0.2
3,247,906 + HSERO_RS14305 0.44 -1.5
3,248,111 + +0.8
3,248,183 + -0.5

Or see this region's nucleotide sequence