Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08360

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08350 and HSERO_RS08355 overlap by 4 nucleotidesHSERO_RS08355 and HSERO_RS08360 are separated by 28 nucleotidesHSERO_RS08360 and HSERO_RS08365 are separated by 114 nucleotides HSERO_RS08350: HSERO_RS08350 - esterase, at 1,901,946 to 1,902,824 _RS08350 HSERO_RS08355: HSERO_RS08355 - dioxygenase, at 1,902,821 to 1,903,474 _RS08355 HSERO_RS08360: HSERO_RS08360 - multidrug DMT transporter permease, at 1,903,503 to 1,904,363 _RS08360 HSERO_RS08365: HSERO_RS08365 - AraC family transcriptional regulator, at 1,904,478 to 1,905,299 _RS08365 Position (kb) 1903 1904 1905Strain fitness (log2 ratio) -1 0 1 2at 1902.567 kb on + strand, within HSERO_RS08350at 1902.567 kb on + strand, within HSERO_RS08350at 1902.591 kb on + strand, within HSERO_RS08350at 1902.638 kb on + strand, within HSERO_RS08350at 1902.720 kb on + strand, within HSERO_RS08350at 1902.757 kb on + strandat 1902.767 kb on + strandat 1903.001 kb on - strand, within HSERO_RS08355at 1903.140 kb on + strand, within HSERO_RS08355at 1903.345 kb on - strand, within HSERO_RS08355at 1903.355 kb on - strand, within HSERO_RS08355at 1903.368 kb on - strand, within HSERO_RS08355at 1903.368 kb on - strand, within HSERO_RS08355at 1903.584 kb on + strandat 1903.627 kb on + strand, within HSERO_RS08360at 1903.627 kb on + strand, within HSERO_RS08360at 1903.668 kb on - strand, within HSERO_RS08360at 1903.729 kb on + strand, within HSERO_RS08360at 1903.742 kb on - strand, within HSERO_RS08360at 1903.783 kb on - strand, within HSERO_RS08360at 1903.799 kb on + strand, within HSERO_RS08360at 1903.834 kb on + strand, within HSERO_RS08360at 1903.877 kb on - strand, within HSERO_RS08360at 1903.995 kb on - strand, within HSERO_RS08360at 1903.997 kb on + strand, within HSERO_RS08360at 1904.142 kb on - strand, within HSERO_RS08360at 1904.192 kb on - strand, within HSERO_RS08360at 1904.267 kb on + strand, within HSERO_RS08360at 1904.367 kb on + strandat 1904.406 kb on - strandat 1904.589 kb on + strandat 1904.589 kb on + strand, within HSERO_RS08365at 1904.592 kb on - strand, within HSERO_RS08365at 1904.592 kb on - strand, within HSERO_RS08365at 1904.597 kb on - strand, within HSERO_RS08365at 1904.639 kb on - strand, within HSERO_RS08365at 1904.674 kb on + strand, within HSERO_RS08365at 1904.872 kb on - strand, within HSERO_RS08365at 1905.179 kb on - strand, within HSERO_RS08365at 1905.192 kb on - strand, within HSERO_RS08365at 1905.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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1,902,567 + HSERO_RS08350 0.71 +0.3
1,902,567 + HSERO_RS08350 0.71 +0.7
1,902,591 + HSERO_RS08350 0.73 -0.2
1,902,638 + HSERO_RS08350 0.79 -0.4
1,902,720 + HSERO_RS08350 0.88 +0.3
1,902,757 + +0.6
1,902,767 + -0.1
1,903,001 - HSERO_RS08355 0.28 +0.9
1,903,140 + HSERO_RS08355 0.49 +0.1
1,903,345 - HSERO_RS08355 0.80 -0.4
1,903,355 - HSERO_RS08355 0.82 -0.1
1,903,368 - HSERO_RS08355 0.84 -0.3
1,903,368 - HSERO_RS08355 0.84 -0.1
1,903,584 + +0.6
1,903,627 + HSERO_RS08360 0.14 +0.4
1,903,627 + HSERO_RS08360 0.14 +0.1
1,903,668 - HSERO_RS08360 0.19 +0.7
1,903,729 + HSERO_RS08360 0.26 +0.7
1,903,742 - HSERO_RS08360 0.28 -0.1
1,903,783 - HSERO_RS08360 0.33 -0.0
1,903,799 + HSERO_RS08360 0.34 +0.7
1,903,834 + HSERO_RS08360 0.38 +2.4
1,903,877 - HSERO_RS08360 0.43 -0.1
1,903,995 - HSERO_RS08360 0.57 +1.2
1,903,997 + HSERO_RS08360 0.57 +0.8
1,904,142 - HSERO_RS08360 0.74 +0.2
1,904,192 - HSERO_RS08360 0.80 +0.0
1,904,267 + HSERO_RS08360 0.89 -0.2
1,904,367 + +0.1
1,904,406 - -0.4
1,904,589 + +1.1
1,904,589 + HSERO_RS08365 0.14 -0.3
1,904,592 - HSERO_RS08365 0.14 -0.6
1,904,592 - HSERO_RS08365 0.14 -0.3
1,904,597 - HSERO_RS08365 0.14 +0.2
1,904,639 - HSERO_RS08365 0.20 +0.5
1,904,674 + HSERO_RS08365 0.24 -0.6
1,904,872 - HSERO_RS08365 0.48 -0.5
1,905,179 - HSERO_RS08365 0.85 -0.2
1,905,192 - HSERO_RS08365 0.87 -0.6
1,905,310 - +0.9

Or see this region's nucleotide sequence