Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06670 and HSERO_RS06675 are separated by 30 nucleotides HSERO_RS06675 and HSERO_RS06680 are separated by 291 nucleotides
HSERO_RS06670: HSERO_RS06670 - porin, at 1,516,212 to 1,517,252
_RS06670
HSERO_RS06675: HSERO_RS06675 - xanthine/CO dehydrogenase maturation protein, at 1,517,283 to 1,518,320
_RS06675
HSERO_RS06680: HSERO_RS06680 - 6-hydroxynicotinate 3-monooxygenase, at 1,518,612 to 1,519,766
_RS06680
Position (kb) 1517
1518
1519 Strain fitness (log2 ratio) -2
-1
0
1 at 1516.314 kb on + strand at 1516.322 kb on - strand, within HSERO_RS06670 at 1516.399 kb on + strand, within HSERO_RS06670 at 1516.542 kb on - strand, within HSERO_RS06670 at 1516.698 kb on - strand, within HSERO_RS06670 at 1516.795 kb on - strand, within HSERO_RS06670 at 1516.812 kb on + strand, within HSERO_RS06670 at 1516.812 kb on + strand, within HSERO_RS06670 at 1516.820 kb on - strand, within HSERO_RS06670 at 1516.820 kb on - strand, within HSERO_RS06670 at 1516.820 kb on - strand, within HSERO_RS06670 at 1516.820 kb on - strand, within HSERO_RS06670 at 1516.820 kb on - strand, within HSERO_RS06670 at 1517.027 kb on - strand, within HSERO_RS06670 at 1517.044 kb on - strand, within HSERO_RS06670 at 1517.076 kb on - strand, within HSERO_RS06670 at 1517.086 kb on + strand, within HSERO_RS06670 at 1517.094 kb on - strand, within HSERO_RS06670 at 1517.109 kb on + strand, within HSERO_RS06670 at 1517.244 kb on - strand at 1517.280 kb on + strand at 1517.281 kb on - strand at 1517.293 kb on - strand at 1517.335 kb on - strand at 1517.377 kb on - strand at 1517.432 kb on + strand, within HSERO_RS06675 at 1517.554 kb on + strand, within HSERO_RS06675 at 1517.554 kb on + strand, within HSERO_RS06675 at 1517.562 kb on - strand, within HSERO_RS06675 at 1517.702 kb on + strand, within HSERO_RS06675 at 1517.788 kb on + strand, within HSERO_RS06675 at 1518.189 kb on - strand, within HSERO_RS06675 at 1518.233 kb on + strand at 1518.241 kb on + strand at 1518.251 kb on + strand at 1518.434 kb on - strand at 1518.488 kb on - strand at 1518.648 kb on + strand at 1518.648 kb on + strand at 1518.656 kb on - strand at 1518.714 kb on - strand at 1518.747 kb on - strand, within HSERO_RS06680 at 1518.959 kb on - strand, within HSERO_RS06680 at 1519.021 kb on + strand, within HSERO_RS06680 at 1519.131 kb on - strand, within HSERO_RS06680 at 1519.168 kb on - strand, within HSERO_RS06680
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 1,516,314 + -0.0 1,516,322 - HSERO_RS06670 0.11 -0.1 1,516,399 + HSERO_RS06670 0.18 +1.0 1,516,542 - HSERO_RS06670 0.32 -1.8 1,516,698 - HSERO_RS06670 0.47 -0.0 1,516,795 - HSERO_RS06670 0.56 +0.3 1,516,812 + HSERO_RS06670 0.58 +0.6 1,516,812 + HSERO_RS06670 0.58 +0.2 1,516,820 - HSERO_RS06670 0.58 -0.0 1,516,820 - HSERO_RS06670 0.58 +0.1 1,516,820 - HSERO_RS06670 0.58 +0.3 1,516,820 - HSERO_RS06670 0.58 +0.5 1,516,820 - HSERO_RS06670 0.58 -0.6 1,517,027 - HSERO_RS06670 0.78 -1.5 1,517,044 - HSERO_RS06670 0.80 +0.8 1,517,076 - HSERO_RS06670 0.83 +0.1 1,517,086 + HSERO_RS06670 0.84 +0.1 1,517,094 - HSERO_RS06670 0.85 +0.2 1,517,109 + HSERO_RS06670 0.86 -0.4 1,517,244 - +0.1 1,517,280 + -0.0 1,517,281 - +0.2 1,517,293 - +0.2 1,517,335 - -0.7 1,517,377 - -0.2 1,517,432 + HSERO_RS06675 0.14 +0.6 1,517,554 + HSERO_RS06675 0.26 -0.1 1,517,554 + HSERO_RS06675 0.26 +0.6 1,517,562 - HSERO_RS06675 0.27 +0.6 1,517,702 + HSERO_RS06675 0.40 +0.5 1,517,788 + HSERO_RS06675 0.49 +0.5 1,518,189 - HSERO_RS06675 0.87 +0.0 1,518,233 + +0.2 1,518,241 + -0.0 1,518,251 + -0.0 1,518,434 - +0.6 1,518,488 - +0.8 1,518,648 + +0.1 1,518,648 + -0.4 1,518,656 - -0.7 1,518,714 - +1.0 1,518,747 - HSERO_RS06680 0.12 +0.1 1,518,959 - HSERO_RS06680 0.30 -0.5 1,519,021 + HSERO_RS06680 0.35 +0.1 1,519,131 - HSERO_RS06680 0.45 +0.1 1,519,168 - HSERO_RS06680 0.48 -1.3
Or see this region's nucleotide sequence