Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03955 and HSERO_RS03960 overlap by 4 nucleotides HSERO_RS03960 and HSERO_RS03965 are separated by 1 nucleotides HSERO_RS03965 and HSERO_RS03970 are separated by 24 nucleotides
HSERO_RS03955: HSERO_RS03955 - ATP synthase, at 869,767 to 871,149
_RS03955
HSERO_RS03960: HSERO_RS03960 - hypothetical protein, at 871,146 to 871,658
_RS03960
HSERO_RS03965: HSERO_RS03965 - hypothetical protein, at 871,660 to 872,316
_RS03965
HSERO_RS03970: HSERO_RS03970 - hypothetical protein, at 872,341 to 873,540
_RS03970
Position (kb) 871
872 Strain fitness (log2 ratio) -1
0
1
2 at 870.316 kb on - strand, within HSERO_RS03955 at 870.337 kb on + strand, within HSERO_RS03955 at 870.502 kb on + strand, within HSERO_RS03955 at 870.796 kb on - strand, within HSERO_RS03955 at 870.853 kb on - strand, within HSERO_RS03955 at 870.853 kb on - strand at 870.886 kb on + strand, within HSERO_RS03955 at 870.917 kb on + strand, within HSERO_RS03955 at 870.931 kb on + strand, within HSERO_RS03955 at 871.135 kb on - strand at 871.186 kb on - strand at 871.186 kb on - strand at 871.248 kb on - strand, within HSERO_RS03960 at 871.250 kb on + strand, within HSERO_RS03960 at 871.374 kb on - strand, within HSERO_RS03960 at 871.505 kb on - strand, within HSERO_RS03960 at 871.505 kb on - strand, within HSERO_RS03960 at 871.525 kb on - strand, within HSERO_RS03960 at 871.738 kb on - strand, within HSERO_RS03965 at 871.795 kb on - strand, within HSERO_RS03965 at 871.797 kb on + strand, within HSERO_RS03965 at 872.153 kb on - strand, within HSERO_RS03965 at 872.203 kb on - strand, within HSERO_RS03965 at 872.486 kb on + strand, within HSERO_RS03970
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 870,316 - HSERO_RS03955 0.40 +1.3 870,337 + HSERO_RS03955 0.41 +0.4 870,502 + HSERO_RS03955 0.53 -0.2 870,796 - HSERO_RS03955 0.74 +0.8 870,853 - HSERO_RS03955 0.79 -0.3 870,853 - +0.9 870,886 + HSERO_RS03955 0.81 -0.0 870,917 + HSERO_RS03955 0.83 +1.9 870,931 + HSERO_RS03955 0.84 +0.2 871,135 - -1.2 871,186 - +0.4 871,186 - +0.1 871,248 - HSERO_RS03960 0.20 +0.5 871,250 + HSERO_RS03960 0.20 +0.6 871,374 - HSERO_RS03960 0.44 +0.5 871,505 - HSERO_RS03960 0.70 +0.6 871,505 - HSERO_RS03960 0.70 +0.3 871,525 - HSERO_RS03960 0.74 +0.5 871,738 - HSERO_RS03965 0.12 -0.1 871,795 - HSERO_RS03965 0.21 -0.4 871,797 + HSERO_RS03965 0.21 +0.1 872,153 - HSERO_RS03965 0.75 -0.5 872,203 - HSERO_RS03965 0.83 -0.1 872,486 + HSERO_RS03970 0.12 +0.2
Or see this region's nucleotide sequence