Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03675 and HSERO_RS03680 are separated by 37 nucleotides HSERO_RS03680 and HSERO_RS03685 overlap by 4 nucleotides
HSERO_RS03675: HSERO_RS03675 - type VI secretion protein, at 803,061 to 805,925
_RS03675
HSERO_RS03680: HSERO_RS03680 - type VI secretion system protein ImpK, at 805,963 to 806,754
_RS03680
HSERO_RS03685: HSERO_RS03685 - type VI secretion protein, at 806,751 to 808,097
_RS03685
Position (kb) 805
806
807 Strain fitness (log2 ratio) -1
0
1 at 805.129 kb on + strand, within HSERO_RS03675 at 805.233 kb on - strand, within HSERO_RS03675 at 805.276 kb on + strand, within HSERO_RS03675 at 805.358 kb on + strand, within HSERO_RS03675 at 805.432 kb on + strand, within HSERO_RS03675 at 805.465 kb on + strand, within HSERO_RS03675 at 805.561 kb on + strand, within HSERO_RS03675 at 805.903 kb on + strand at 805.913 kb on + strand at 805.966 kb on + strand at 805.969 kb on - strand at 805.969 kb on - strand at 805.969 kb on - strand at 805.991 kb on - strand at 806.070 kb on - strand, within HSERO_RS03680 at 806.070 kb on - strand, within HSERO_RS03680 at 806.539 kb on - strand, within HSERO_RS03680 at 806.641 kb on + strand, within HSERO_RS03680 at 806.905 kb on + strand, within HSERO_RS03685 at 807.029 kb on + strand, within HSERO_RS03685 at 807.252 kb on - strand, within HSERO_RS03685 at 807.353 kb on - strand, within HSERO_RS03685 at 807.402 kb on + strand, within HSERO_RS03685 at 807.402 kb on + strand, within HSERO_RS03685 at 807.548 kb on - strand, within HSERO_RS03685 at 807.565 kb on + strand, within HSERO_RS03685 at 807.581 kb on + strand, within HSERO_RS03685 at 807.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 805,129 + HSERO_RS03675 0.72 +0.5 805,233 - HSERO_RS03675 0.76 -0.1 805,276 + HSERO_RS03675 0.77 +0.0 805,358 + HSERO_RS03675 0.80 +0.0 805,432 + HSERO_RS03675 0.83 -0.5 805,465 + HSERO_RS03675 0.84 +0.6 805,561 + HSERO_RS03675 0.87 +0.3 805,903 + +0.3 805,913 + +0.9 805,966 + -0.1 805,969 - +0.5 805,969 - +0.8 805,969 - -0.4 805,991 - -1.6 806,070 - HSERO_RS03680 0.14 +0.7 806,070 - HSERO_RS03680 0.14 -0.8 806,539 - HSERO_RS03680 0.73 -0.2 806,641 + HSERO_RS03680 0.86 +1.4 806,905 + HSERO_RS03685 0.11 +0.2 807,029 + HSERO_RS03685 0.21 -0.4 807,252 - HSERO_RS03685 0.37 +0.0 807,353 - HSERO_RS03685 0.45 -0.1 807,402 + HSERO_RS03685 0.48 -0.7 807,402 + HSERO_RS03685 0.48 -0.3 807,548 - HSERO_RS03685 0.59 -0.3 807,565 + HSERO_RS03685 0.60 +0.3 807,581 + HSERO_RS03685 0.62 +0.5 807,651 - -0.1
Or see this region's nucleotide sequence