Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02600 and HSERO_RS02605 are separated by 111 nucleotides HSERO_RS02605 and HSERO_RS02610 are separated by 3 nucleotides HSERO_RS02610 and HSERO_RS02615 are separated by 76 nucleotides
HSERO_RS02600: HSERO_RS02600 - bile acid:sodium symporter, at 569,461 to 570,474
_RS02600
HSERO_RS02605: HSERO_RS02605 - LysR family transcriptional regulator, at 570,586 to 571,434
_RS02605
HSERO_RS02610: HSERO_RS02610 - hypothetical protein, at 571,438 to 571,836
_RS02610
HSERO_RS02615: HSERO_RS02615 - polymerase, at 571,913 to 573,550
_RS02615
Position (kb) 571
572 Strain fitness (log2 ratio) -1
0
1 at 570.444 kb on + strand at 570.501 kb on + strand at 570.509 kb on - strand at 570.596 kb on - strand at 570.630 kb on - strand at 570.665 kb on + strand at 570.669 kb on + strand at 570.749 kb on + strand, within HSERO_RS02605 at 570.757 kb on - strand, within HSERO_RS02605 at 570.776 kb on + strand, within HSERO_RS02605 at 570.795 kb on + strand, within HSERO_RS02605 at 570.968 kb on + strand, within HSERO_RS02605 at 570.975 kb on + strand, within HSERO_RS02605 at 570.984 kb on - strand, within HSERO_RS02605 at 570.986 kb on + strand, within HSERO_RS02605 at 570.994 kb on - strand, within HSERO_RS02605 at 571.004 kb on - strand, within HSERO_RS02605 at 571.297 kb on - strand, within HSERO_RS02605 at 571.365 kb on + strand at 571.448 kb on + strand at 571.567 kb on + strand, within HSERO_RS02610 at 571.780 kb on - strand, within HSERO_RS02610 at 571.949 kb on + strand at 571.967 kb on + strand at 571.993 kb on + strand at 572.031 kb on + strand at 572.039 kb on - strand at 572.074 kb on - strand at 572.120 kb on + strand, within HSERO_RS02615 at 572.128 kb on - strand, within HSERO_RS02615 at 572.238 kb on - strand, within HSERO_RS02615 at 572.366 kb on + strand, within HSERO_RS02615 at 572.455 kb on + strand, within HSERO_RS02615 at 572.465 kb on + strand, within HSERO_RS02615 at 572.589 kb on + strand, within HSERO_RS02615 at 572.661 kb on - strand, within HSERO_RS02615 at 572.715 kb on - strand, within HSERO_RS02615 at 572.747 kb on - strand, within HSERO_RS02615 at 572.754 kb on - strand, within HSERO_RS02615 at 572.800 kb on + strand, within HSERO_RS02615 at 572.810 kb on + strand, within HSERO_RS02615 at 572.833 kb on + strand, within HSERO_RS02615 at 572.833 kb on + strand, within HSERO_RS02615
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 570,444 + -0.2 570,501 + +0.4 570,509 - +0.6 570,596 - +1.0 570,630 - +1.3 570,665 + +0.1 570,669 + +1.2 570,749 + HSERO_RS02605 0.19 +0.4 570,757 - HSERO_RS02605 0.20 +0.8 570,776 + HSERO_RS02605 0.22 +0.1 570,795 + HSERO_RS02605 0.25 -0.1 570,968 + HSERO_RS02605 0.45 +0.5 570,975 + HSERO_RS02605 0.46 +0.1 570,984 - HSERO_RS02605 0.47 +0.5 570,986 + HSERO_RS02605 0.47 -1.7 570,994 - HSERO_RS02605 0.48 -0.1 571,004 - HSERO_RS02605 0.49 -0.7 571,297 - HSERO_RS02605 0.84 +0.5 571,365 + +0.2 571,448 + -1.1 571,567 + HSERO_RS02610 0.32 +0.9 571,780 - HSERO_RS02610 0.86 +0.7 571,949 + +0.5 571,967 + -0.5 571,993 + +0.5 572,031 + -0.2 572,039 - +0.1 572,074 - -0.1 572,120 + HSERO_RS02615 0.13 -0.3 572,128 - HSERO_RS02615 0.13 +1.3 572,238 - HSERO_RS02615 0.20 +0.2 572,366 + HSERO_RS02615 0.28 +0.0 572,455 + HSERO_RS02615 0.33 +0.5 572,465 + HSERO_RS02615 0.34 +0.4 572,589 + HSERO_RS02615 0.41 -1.1 572,661 - HSERO_RS02615 0.46 -0.1 572,715 - HSERO_RS02615 0.49 +0.3 572,747 - HSERO_RS02615 0.51 +0.5 572,754 - HSERO_RS02615 0.51 -0.3 572,800 + HSERO_RS02615 0.54 -0.3 572,810 + HSERO_RS02615 0.55 +0.2 572,833 + HSERO_RS02615 0.56 +0.1 572,833 + HSERO_RS02615 0.56 +1.1
Or see this region's nucleotide sequence