Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02555 and HSERO_RS02560 are separated by 364 nucleotides HSERO_RS02560 and HSERO_RS02565 are separated by 141 nucleotides HSERO_RS02565 and HSERO_RS02570 are separated by 56 nucleotides
HSERO_RS02555: HSERO_RS02555 - chemotaxis protein, at 561,112 to 562,680
_RS02555
HSERO_RS02560: HSERO_RS02560 - hypothetical protein, at 563,045 to 563,665
_RS02560
HSERO_RS02565: HSERO_RS02565 - nucleotide pyrophosphohydrolase, at 563,807 to 564,220
_RS02565
HSERO_RS02570: HSERO_RS02570 - methyltransferase, at 564,277 to 565,854
_RS02570
Position (kb) 563
564 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 562.219 kb on + strand, within HSERO_RS02555 at 562.275 kb on - strand, within HSERO_RS02555 at 562.317 kb on - strand, within HSERO_RS02555 at 562.345 kb on + strand at 562.398 kb on - strand, within HSERO_RS02555 at 562.696 kb on - strand at 562.861 kb on - strand at 562.874 kb on + strand at 562.881 kb on + strand at 562.948 kb on - strand at 562.952 kb on + strand at 563.023 kb on - strand at 563.139 kb on + strand, within HSERO_RS02560 at 563.159 kb on + strand, within HSERO_RS02560 at 563.499 kb on + strand, within HSERO_RS02560 at 563.633 kb on - strand at 563.662 kb on + strand at 563.730 kb on + strand at 563.732 kb on - strand at 563.778 kb on - strand at 563.865 kb on + strand, within HSERO_RS02565 at 563.980 kb on - strand, within HSERO_RS02565 at 564.006 kb on - strand, within HSERO_RS02565 at 564.086 kb on - strand, within HSERO_RS02565 at 564.088 kb on + strand, within HSERO_RS02565 at 564.169 kb on - strand, within HSERO_RS02565 at 564.202 kb on - strand at 564.274 kb on + strand at 564.313 kb on + strand at 564.378 kb on - strand at 564.542 kb on + strand, within HSERO_RS02570 at 564.590 kb on - strand, within HSERO_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 562,219 + HSERO_RS02555 0.71 +0.6 562,275 - HSERO_RS02555 0.74 -0.2 562,317 - HSERO_RS02555 0.77 -0.8 562,345 + +1.7 562,398 - HSERO_RS02555 0.82 +0.0 562,696 - -0.2 562,861 - +1.3 562,874 + -0.4 562,881 + +0.6 562,948 - +0.5 562,952 + -0.3 563,023 - -0.0 563,139 + HSERO_RS02560 0.15 +0.4 563,159 + HSERO_RS02560 0.18 +4.3 563,499 + HSERO_RS02560 0.73 -0.0 563,633 - +0.2 563,662 + +0.3 563,730 + +0.3 563,732 - -0.0 563,778 - -0.3 563,865 + HSERO_RS02565 0.14 -0.6 563,980 - HSERO_RS02565 0.42 +0.2 564,006 - HSERO_RS02565 0.48 -1.7 564,086 - HSERO_RS02565 0.67 -0.0 564,088 + HSERO_RS02565 0.68 +1.0 564,169 - HSERO_RS02565 0.87 +0.0 564,202 - +0.2 564,274 + +1.0 564,313 + -0.0 564,378 - -0.1 564,542 + HSERO_RS02570 0.17 -0.1 564,590 - HSERO_RS02570 0.20 +0.1
Or see this region's nucleotide sequence