Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14170

Experiment: Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14165 and BWI76_RS14170 are separated by 48 nucleotidesBWI76_RS14170 and BWI76_RS14175 are separated by 135 nucleotides BWI76_RS14165: BWI76_RS14165 - trans-acting regulatory protein of aco operon, at 2,963,756 to 2,966,509 _RS14165 BWI76_RS14170: BWI76_RS14170 - hypothetical protein, at 2,966,558 to 2,966,941 _RS14170 BWI76_RS14175: BWI76_RS14175 - dehydrogenase, at 2,967,077 to 2,967,952 _RS14175 Position (kb) 2966 2967Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2965.808 kb on + strand, within BWI76_RS14165at 2965.813 kb on + strand, within BWI76_RS14165at 2966.029 kb on + strand, within BWI76_RS14165at 2966.029 kb on - strand, within BWI76_RS14165at 2966.341 kb on + strandat 2966.408 kb on - strandat 2966.446 kb on + strandat 2966.561 kb on + strandat 2966.569 kb on - strandat 2966.579 kb on + strandat 2966.656 kb on + strand, within BWI76_RS14170at 2966.741 kb on - strand, within BWI76_RS14170at 2966.767 kb on - strand, within BWI76_RS14170at 2966.840 kb on + strand, within BWI76_RS14170at 2966.889 kb on - strand, within BWI76_RS14170at 2966.907 kb on + strandat 2966.979 kb on + strandat 2966.979 kb on + strandat 2967.034 kb on - strandat 2967.036 kb on + strandat 2967.075 kb on + strandat 2967.075 kb on + strandat 2967.123 kb on + strandat 2967.147 kb on - strandat 2967.156 kb on + strandat 2967.220 kb on - strand, within BWI76_RS14175at 2967.277 kb on + strandat 2967.285 kb on - strand, within BWI76_RS14175at 2967.335 kb on - strand, within BWI76_RS14175at 2967.571 kb on + strand, within BWI76_RS14175at 2967.579 kb on - strand, within BWI76_RS14175at 2967.708 kb on - strand, within BWI76_RS14175

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL
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2,965,808 + BWI76_RS14165 0.75 +2.1
2,965,813 + BWI76_RS14165 0.75 -0.2
2,966,029 + BWI76_RS14165 0.83 +0.1
2,966,029 - BWI76_RS14165 0.83 -0.2
2,966,341 + -0.1
2,966,408 - +0.5
2,966,446 + +0.2
2,966,561 + +0.0
2,966,569 - +0.1
2,966,579 + -0.8
2,966,656 + BWI76_RS14170 0.26 -1.7
2,966,741 - BWI76_RS14170 0.48 -2.2
2,966,767 - BWI76_RS14170 0.54 +0.1
2,966,840 + BWI76_RS14170 0.73 -0.3
2,966,889 - BWI76_RS14170 0.86 -0.8
2,966,907 + -0.9
2,966,979 + +0.3
2,966,979 + +0.4
2,967,034 - +0.2
2,967,036 + +0.7
2,967,075 + -1.7
2,967,075 + -0.7
2,967,123 + -1.5
2,967,147 - +0.2
2,967,156 + +2.1
2,967,220 - BWI76_RS14175 0.16 +0.3
2,967,277 + +4.3
2,967,285 - BWI76_RS14175 0.24 +0.5
2,967,335 - BWI76_RS14175 0.29 -1.0
2,967,571 + BWI76_RS14175 0.56 -0.1
2,967,579 - BWI76_RS14175 0.57 +0.7
2,967,708 - BWI76_RS14175 0.72 +0.2

Or see this region's nucleotide sequence