Experiment: Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00800 and BWI76_RS00805 are separated by 166 nucleotides BWI76_RS00805 and BWI76_RS00810 are separated by 132 nucleotides
BWI76_RS00800: BWI76_RS00800 - LysR family transcriptional regulator, at 163,911 to 164,816
_RS00800
BWI76_RS00805: BWI76_RS00805 - 5,10-methylenetetrahydrofolate reductase, at 164,983 to 165,870
_RS00805
BWI76_RS00810: BWI76_RS00810 - DeoR family transcriptional regulator, at 166,003 to 166,752
_RS00810
Position (kb) 164
165
166 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 164.060 kb on + strand at 164.154 kb on + strand, within BWI76_RS00800 at 164.233 kb on + strand, within BWI76_RS00800 at 164.241 kb on - strand, within BWI76_RS00800 at 164.241 kb on - strand, within BWI76_RS00800 at 164.464 kb on + strand, within BWI76_RS00800 at 164.734 kb on - strand at 164.739 kb on - strand at 164.745 kb on - strand at 164.791 kb on - strand at 164.988 kb on - strand at 165.056 kb on - strand at 165.139 kb on - strand, within BWI76_RS00805 at 165.252 kb on - strand, within BWI76_RS00805 at 165.364 kb on - strand, within BWI76_RS00805 at 165.492 kb on + strand, within BWI76_RS00805 at 165.803 kb on + strand at 165.808 kb on + strand at 165.811 kb on - strand at 165.816 kb on - strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.848 kb on + strand at 165.853 kb on + strand at 165.880 kb on + strand at 165.914 kb on + strand at 166.001 kb on + strand at 166.009 kb on - strand at 166.009 kb on - strand at 166.068 kb on - strand at 166.095 kb on + strand, within BWI76_RS00810 at 166.204 kb on - strand, within BWI76_RS00810 at 166.254 kb on + strand, within BWI76_RS00810 at 166.262 kb on - strand, within BWI76_RS00810 at 166.293 kb on - strand, within BWI76_RS00810 at 166.346 kb on - strand, within BWI76_RS00810 at 166.447 kb on - strand, within BWI76_RS00810 at 166.704 kb on + strand at 166.704 kb on + strand at 166.826 kb on + strand at 166.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL remove 164,060 + +0.2 164,154 + BWI76_RS00800 0.27 +0.1 164,233 + BWI76_RS00800 0.36 +0.4 164,241 - BWI76_RS00800 0.36 +0.2 164,241 - BWI76_RS00800 0.36 +0.5 164,464 + BWI76_RS00800 0.61 +0.1 164,734 - -0.1 164,739 - -0.4 164,745 - +0.1 164,791 - -0.7 164,988 - +1.0 165,056 - -4.1 165,139 - BWI76_RS00805 0.18 -3.0 165,252 - BWI76_RS00805 0.30 -4.2 165,364 - BWI76_RS00805 0.43 -3.9 165,492 + BWI76_RS00805 0.57 -5.1 165,803 + -2.9 165,808 + -4.2 165,811 - -4.0 165,816 - -2.2 165,823 + -3.9 165,823 + -3.4 165,848 + +0.1 165,853 + -5.9 165,880 + -1.3 165,914 + +0.2 166,001 + -0.3 166,009 - +0.2 166,009 - +0.4 166,068 - +0.2 166,095 + BWI76_RS00810 0.12 +2.6 166,204 - BWI76_RS00810 0.27 -0.3 166,254 + BWI76_RS00810 0.33 +0.7 166,262 - BWI76_RS00810 0.35 +0.4 166,293 - BWI76_RS00810 0.39 +0.9 166,346 - BWI76_RS00810 0.46 -0.2 166,447 - BWI76_RS00810 0.59 +0.4 166,704 + +1.4 166,704 + -0.3 166,826 + +2.0 166,827 + -0.6
Or see this region's nucleotide sequence