Experiment: Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00140 and BWI76_RS00145 are separated by 49 nucleotides BWI76_RS00145 and BWI76_RS00150 are separated by 47 nucleotides BWI76_RS00150 and BWI76_RS00155 overlap by 1 nucleotides
BWI76_RS00140: BWI76_RS00140 - phosphate transport system regulator PhoU, at 27,190 to 27,915
_RS00140
BWI76_RS00145: BWI76_RS00145 - phosphate ABC transporter ATP-binding protein, at 27,965 to 28,738
_RS00145
BWI76_RS00150: BWI76_RS00150 - phosphate transporter permease subunit PtsA, at 28,786 to 29,676
_RS00150
BWI76_RS00155: BWI76_RS00155 - phosphate transporter permease subunit PstC, at 29,676 to 30,635
_RS00155
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.969 kb on - strand at 26.970 kb on + strand at 26.978 kb on - strand at 26.980 kb on + strand at 26.980 kb on + strand at 26.988 kb on - strand at 26.988 kb on - strand at 26.988 kb on - strand at 26.988 kb on - strand at 27.001 kb on - strand at 27.015 kb on - strand at 27.022 kb on - strand at 27.025 kb on - strand at 27.037 kb on + strand at 27.044 kb on - strand at 27.045 kb on - strand at 27.045 kb on - strand at 27.103 kb on + strand at 27.204 kb on + strand at 27.218 kb on + strand at 27.226 kb on - strand at 27.226 kb on - strand at 27.261 kb on - strand at 27.261 kb on - strand at 27.261 kb on - strand at 27.261 kb on - strand at 27.261 kb on - strand at 27.268 kb on - strand, within BWI76_RS00140 at 29.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL remove 26,969 - -0.8 26,970 + +0.7 26,978 - +0.6 26,980 + -0.4 26,980 + +0.4 26,988 - -0.2 26,988 - -0.6 26,988 - +0.6 26,988 - -0.0 27,001 - -0.3 27,015 - -0.1 27,022 - -1.1 27,025 - -0.2 27,037 + -0.1 27,044 - -1.5 27,045 - +0.2 27,045 - -1.6 27,103 + -0.3 27,204 + -0.7 27,218 + +0.5 27,226 - -1.6 27,226 - +0.4 27,261 - +0.6 27,261 - +1.0 27,261 - +1.3 27,261 - +1.0 27,261 - +1.0 27,268 - BWI76_RS00140 0.11 +0.7 29,661 - -1.6
Or see this region's nucleotide sequence